Laporan audit skill
alterlab-alphafold Laporan audit.
Predict protein 3D structures with AlphaFold2 via ColabFold — MMseqs2-accelerated MSAs, monomer and AlphaFold2-Multimer complex folding, and confidence-based validation (pLDDT, pTM/ipTM, PAE). Use when folding a protein sequence or complex from FASTA, generating a predicted structure with confidence metrics, ranking models, or checking self-consistency of a design. For co-folding a protein WITH a small-molecule ligand or predicting binding affinity prefer alterlab-boltz; for antibody–antigen or one-FASTA multi-entity complexes prefer alterlab-chai; to LOOK UP an already-computed structure prefer alterlab-alphafold-db; for ESM embeddings or inverse folding prefer alterlab-esm. Part of the AlterLab Academic Skills suite.
Trust Score OpenAgentSkill
Trust Score OpenAgentSkill
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
Adopsi GitHub
Peringatan48
66 star GitHub
Aktivitas star/fork
Peringatan48
66 star dan 13 fork; aktivitas issue tidak tersedia dalam metadata saat ini
Pemeliharaan terbaru
Lulus88
1 bulan sejak push
Kejelasan lisensi
Lulus86
MIT
Kelengkapan README/SKILL.md
Lulus86
Metadata memuat konteks penggunaan dan alur kerja yang cukup
Risiko dependensi/runtime
Peringatan56
command execution surface, network or browser surface
Ketersediaan pemasangan
Lulus92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-alphafold
Keamanan perintah pemasangan
Lulus92
Jalur pemasangan paket atau runtime standar
Cakupan izin
Peringatan50
shell or command execution, network or browser access
Bukti repositori
Lulus86
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-alphafold
Status peninjauan
Info66
Data tinjauan AI tersedia
Hasil terbukti Agent
Info54
Belum ada data hasil Agent
Pemeriksaan
Tinjauan pemasangan dan adopsi
Jalur pemasangan
92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-alphafold
Repositori
88
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-alphafold
Lisensi
86
MIT
Pemeliharaan
88
1 bulan sejak push
Tinjauan AI
55
allowed-tools grants unrestricted Bash(python:*) and Bash(uv:*), which permits arbitrary code execution; this is broad even if common for bioinformatics tooling.
Kelengkapan README/SKILL.md
86
Usable description available
Risiko dependensi
56
command execution surface, network or browser surface
Keamanan perintah pemasangan
92
Jalur pemasangan paket atau runtime standar
Cakupan izin
50
shell or command execution, network or browser access
Aktivitas star/fork
48
66 star dan 13 fork; aktivitas issue tidak tersedia dalam metadata saat ini
Adopsi
68
66 star GitHub
Peringatan
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- allowed-tools grants unrestricted Bash(python:*) and Bash(uv:*), which permits arbitrary code execution; this is broad even if common for bioinformatics tooling.
- SKILL.md contains TODO(verify) placeholders for exact ColabFold installation pins and flag names, reducing reproducibility and clarity for agent execution.
- The MSA step sends sequences to a public MMseqs2 API by default; the skill mentions disclosure for sensitive sequences but does not enforce or strongly gate this in the workflow.
- Setup instructions are incomplete: no exact package version, CUDA/JAX pin, or verified command sequence is provided for installing and running ColabFold.
- Quality score needs review
- Permission surface needs review: shell or command execution, network or browser access
- GitHub adoption: 66 GitHub stars
- Stars/forks activity: 66 stars, 13 forks; issue activity unavailable in current metadata
- Dependency/runtime risk: command execution surface, network or browser surface
- Permission surface: shell or command execution, network or browser access
Metode
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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