Scripts to download genomes from the NCBI FTP servers

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

Build a partitioned pangenome graph from microbial genomes

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

:microscope: Assemble large genomes using short reads

Align proteins to genomes with splicing and frameshift

Rapid comparison and dereplication of genomes