OpenAgentSkill Registry Manifest
Skill: cellxgene-census
Slug: k-dense-ai-cellxgene-census
Category: research
Description: Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.

Agent fit:
- Decision: 100/100 Production-ready
- Primary fit: Research agents
- Role: Primary pick

Supply profile:
- Track: Research and knowledge work
- Scenario: Research agents
- Applicable agents: Claude Code, CLI, Codex, Cursor
- Maintenance: 6d since push
- Risk: Needs review

Trust:
- Trust score: 73/100 Strong shortlist
- Audit: 84/100 Needs review

Attribution:
- Status: Registry indexed
- Source: recursive skill source sync
- Creator: K-Dense-AI
- Claim URL: https://www.openagentskill.com/skills/k-dense-ai-cellxgene-census#claim-this-skill

Install:
npx skills add K-Dense-AI/scientific-agent-skills --skill cellxgene-census

URLs:
- Web: https://www.openagentskill.com/skills/k-dense-ai-cellxgene-census
- API: https://www.openagentskill.com/api/agent/skills/k-dense-ai-cellxgene-census
- Install API: https://www.openagentskill.com/api/skills/k-dense-ai-cellxgene-census/install
- Repository: https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/cellxgene-census