{"slug":"gptomics-bioskills","name":"BioSkills","description":"a set of SKILLS.md for doing bioinformatics with agents like claude code","tagline":"a set of SKILLS.md for doing bioinformatics with agents like claude code","category":"development","tags":["claude-code","agent-skills","developer-tools","python","github"],"author":{"name":"GPTomics","verified":false,"url":"https://github.com/GPTomics"},"attribution":{"status":"community_indexed","statusLabel":"Community indexed","shortLabel":"COMMUNITY INDEXED","sourceLabel":"GitHub star discovery","sourceDetail":"GPTomics/bioSkills","creatorName":"GPTomics","creatorUrl":"https://github.com/GPTomics","sourceUrl":"https://github.com/GPTomics/bioSkills","indexedBy":"OpenAgentSkill community index","claimUrl":"https://www.openagentskill.com/skills/gptomics-bioskills#claim-this-skill","claimCta":"Claim this skill","trustNote":"This listing was indexed from public sources and is not marked official until a maintainer claim is approved.","publicNote":"Attribution links to the public repository or creator profile. Creators can claim the listing to update ownership signals."},"stats":{"stars":898,"forks":158,"downloads":0,"rating":0,"review_count":0,"quality_score":54.38},"quality":{"score":87,"tier":"excellent","label":"Excellent","summary":"High-confidence pick with strong adoption and healthy maintenance signals.","signals":[{"label":"GitHub stars","value":"898","tone":"positive"},{"label":"Freshness","value":"2d ago","tone":"positive"},{"label":"Install ready","value":"Yes","tone":"positive"},{"label":"License","value":"MIT","tone":"neutral"}],"warnings":[]},"trust":{"score":87,"tier":"production","label":"Production candidate","summary":"Strong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency risk, and install availability.","recommendedAction":"Shortlist for production use, then run a normal repository and dependency review.","dimensions":[{"id":"github_adoption","label":"GitHub 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state.","severity":"medium"}],"policy_warnings":["Quality score needs review"],"constraints_applied":{"max_risk":"medium","needs_install_command":true,"min_stars":0}},"safety_gate":{"tier":"reviewed","label":"Reviewed","badge":"REVIEWED","auto_install_policy":"review","auto_install_allowed":false,"human_review_required":true,"blocked":false,"recommended_action":"Review the audit page, then allow agent install in a sandboxed workflow.","reasons":["Safe-to-try audit","75/100 agent safety score"]},"supply_profile":{"track":{"slug":"coding","label":"Coding and developer agents","shortLabel":"Coding","description":"Code review, repo analysis, testing, CI, GitHub, DevOps, and developer workflow skills."},"scenario":{"label":"Coding agents","description":"I need a coding agent that can understand a repository, edit code, and review pull requests.","useCases":[{"slug":"coding-agents","title":"Coding agents"},{"slug":"rag-knowledge","title":"RAG and 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automation","url":"https://www.openagentskill.com/use-cases/workflow-automation"}],"install":"npx skills add GPTomics/bioSkills","install_targets":[{"id":"openagentskill-cli","label":"CLI","title":"OpenAgentSkill CLI","kind":"command","value":"npx skills add GPTomics/bioSkills","description":"Use the registry command when your workflow supports the OpenAgentSkill installer.","copyLabel":"Copy command"},{"id":"codex","label":"Codex","title":"Codex install prompt","kind":"agent-prompt","value":"Install the \"BioSkills\" agent skill from https://github.com/GPTomics/bioSkills. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: a set of SKILLS.md for doing bioinformatics with agents like claude code","description":"Give Codex a repo-aware install prompt when the skill is not available through a local CLI.","copyLabel":"Copy prompt"},{"id":"claude-code","label":"Claude Code","title":"Claude Code skill prompt","kind":"agent-prompt","value":"Add \"BioSkills\" as a Claude Code skill from https://github.com/GPTomics/bioSkills. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: a set of SKILLS.md for doing bioinformatics with agents like claude code","description":"Use this prompt to ask Claude Code to add the skill and explain the local activation steps.","copyLabel":"Copy prompt"},{"id":"cursor","label":"Cursor","title":"Cursor rule prompt","kind":"agent-prompt","value":"Turn \"BioSkills\" from https://github.com/GPTomics/bioSkills into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: a set of SKILLS.md for doing bioinformatics with agents like claude code","description":"Use this when installing as Cursor project rules or reusable agent instructions.","copyLabel":"Copy prompt"}],"repository":"https://github.com/GPTomics/bioSkills","github_repo":"GPTomics/bioSkills","version":"1.0.0","license":"MIT","updated_at":"2026-06-14T11:01:54.909345+00:00","canonical_key":"gptomics/bioskills","recommendation_reasons":["Useful GitHub adoption: 898 stars","Install handoff is available","Repository freshness signal is available"],"urls":{"web":"https://www.openagentskill.com/skills/gptomics-bioskills","api":"https://www.openagentskill.com/api/agent/skills/gptomics-bioskills","install_api":"https://www.openagentskill.com/api/skills/gptomics-bioskills/install","audit":"https://www.openagentskill.com/skills/gptomics-bioskills/audit","repository":"https://github.com/GPTomics/bioSkills"},"meta":{"endpoint":"/api/registry/manifest/{slug}","canonical_agent_endpoint":"/api/agent/skills/gptomics-bioskills","agent_friendly":true,"api_version":"1.0","generated_at":"2026-06-16T11:21:05.447Z"}}