{"slug":"clawbio-affinity-proteomics","name":"affinity-proteomics","description":"Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer,","tagline":"Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer,","category":"automation","tags":["agent-skill"],"author":{"name":"ClawBio","verified":false,"url":"https://github.com/ClawBio"},"attribution":{"status":"registry_indexed","statusLabel":"Registry indexed","shortLabel":"REGISTRY INDEXED","sourceLabel":"recursive skill source sync","sourceDetail":"ClawBio/ClawBio","creatorName":"ClawBio","creatorUrl":"https://github.com/ClawBio","sourceUrl":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics","indexedBy":"OpenAgentSkill community index","claimUrl":"https://www.openagentskill.com/skills/clawbio-affinity-proteomics#claim-this-skill","claimCta":"Claim this skill","trustNote":"This listing was indexed from public sources and is not marked official until a maintainer claim is approved.","publicNote":"Attribution links to the public repository or creator profile. Creators can claim the listing to update ownership signals."},"stats":{"stars":1112,"forks":257,"verified_installs":0,"install_attempts":0,"successful_runs":0,"total_outcomes":0,"downloads":0,"rating":0,"review_count":0,"quality_score":44.73},"quality":{"score":77,"tier":"strong","label":"Strong","summary":"Solid option that is likely worth shortlisting for production workflows.","signals":[{"label":"GitHub stars","value":"1.1K","tone":"positive"},{"label":"Freshness","value":"Today","tone":"positive"},{"label":"Install ready","value":"Yes","tone":"positive"},{"label":"License","value":"MIT","tone":"neutral"}],"warnings":["The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; installation instructions are provided but not guaranteed to work offline."]},"trust":{"version":"trust-score-v4","score":75,"tier":"strong","label":"Strong shortlist","summary":"Good trust signals with a few areas worth checking before rollout.","recommendedAction":"Test in a sandbox workflow and compare its install path with close alternatives.","dimensions":[{"id":"github_adoption","label":"GitHub adoption","score":86,"weight":0.13,"status":"pass","detail":"1.1K GitHub stars"},{"id":"repo_activity","label":"Stars/forks activity","score":83,"weight":0.08,"status":"pass","detail":"1.1K stars, 257 forks; issue activity unavailable in current metadata"},{"id":"maintenance","label":"Recent maintenance","score":100,"weight":0.14,"status":"pass","detail":"Pushed today"},{"id":"license","label":"License clarity","score":86,"weight":0.09,"status":"pass","detail":"MIT"},{"id":"documentation","label":"README/SKILL.md completeness","score":86,"weight":0.14,"status":"pass","detail":"Metadata includes enough usage and workflow context"},{"id":"dependency_risk","label":"Dependency/runtime risk","score":72,"weight":0.12,"status":"info","detail":"command execution surface"},{"id":"installability","label":"Install availability","score":92,"weight":0.1,"status":"pass","detail":"npx skills add ClawBio/ClawBio --skill affinity-proteomics"},{"id":"install_safety","label":"Install command safety","score":92,"weight":0.1,"status":"pass","detail":"standard package or runtime install path"},{"id":"permission_surface","label":"Permission surface","score":50,"weight":0.07,"status":"warn","detail":"shell or command execution, filesystem or document access"},{"id":"repository","label":"Repository evidence","score":86,"weight":0.04,"status":"pass","detail":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics"},{"id":"review_status","label":"Review status","score":66,"weight":0.05,"status":"info","detail":"AI review data available"},{"id":"agent_outcomes","label":"Agent Proven outcomes","score":54,"weight":0.13,"status":"info","detail":"No agent outcome data yet"}],"checks":[{"status":"pass","label":"GitHub adoption","detail":"1.1K GitHub stars"},{"status":"pass","label":"Stars/forks activity","detail":"1.1K stars, 257 forks; issue activity unavailable in current metadata"},{"status":"pass","label":"Recent maintenance","detail":"Pushed today"},{"status":"pass","label":"License clarity","detail":"MIT"},{"status":"pass","label":"README/SKILL.md completeness","detail":"Metadata includes enough usage and workflow context"},{"status":"info","label":"Dependency/runtime risk","detail":"command execution surface"},{"status":"pass","label":"Install availability","detail":"npx skills add ClawBio/ClawBio --skill affinity-proteomics"},{"status":"pass","label":"Install command safety","detail":"standard package or runtime install path"},{"status":"warn","label":"Permission surface","detail":"shell or command execution, filesystem or document access"},{"status":"pass","label":"Repository evidence","detail":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics"},{"status":"info","label":"Review status","detail":"AI review data available"},{"status":"info","label":"Agent Proven outcomes","detail":"No agent outcome data yet"},{"status":"warn","label":"Ownership","detail":"No approved owner claim yet"},{"status":"info","label":"OpenAgentSkill usage","detail":"No local usage activity yet"},{"status":"info","label":"Agent outcomes","detail":"No agent outcome data yet"}],"strengths":["AI review approved","Install path is available","Repository evidence is available","Recently maintained repository","Meaningful GitHub adoption signal","Install command has no obvious high-risk pattern"],"warnings":["The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; 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installation instructions are provided but not guaranteed to work offline.","Financial research output is not financial advice; require human review before any live investment decision.","Quality score needs review","Permission surface needs review: shell or command execution, filesystem or document access","Permission surface: shell or command execution, filesystem or document access"]},"safety":{"score":49,"level":"avoid_auto_install","label":"Avoid automatic install","safety_tier":{"tier":"experimental","label":"Experimental","badge":"EXPERIMENTAL","summary":"Sparse or mixed signals. 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the full script was not fully inspected for edge-case handling.","Financial research output is not financial advice; require human review before any live investment decision."]},"decision":{"readiness_score":88,"readiness_label":"Production-ready","headline":"Primary pick for Research agents","role":"Primary pick","primary_fit":"Research agents","best_for":["Research agents workflows","Claude Code teams","teams that value GitHub adoption signals"],"risks":["The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; installation instructions are provided but not guaranteed to work offline.","No OpenAgentSkill engagement data yet"],"next_steps":["Install it in a sandbox agent and run one Research agents task end to end.","Compare output quality, latency, and failure behavior against at least one alternative.","Promote it into production only after reviewing repository permissions, license, and maintenance signals."]},"agent_readable_metadata":{"version":"openagentskill-agent-metadata-v2","skill":{"slug":"clawbio-affinity-proteomics","name":"affinity-proteomics","description":"Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer,","category":"automation","url":"https://www.openagentskill.com/skills/clawbio-affinity-proteomics","repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics","github_repo":"ClawBio/ClawBio"},"suited_tasks":["Research agents workflows","Claude Code teams","teams that value GitHub adoption signals","Search sources","Extract claims","Synthesize findings","Move data between tools","Transform files"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI","CLI"],"install":{"command":"npx skills add ClawBio/ClawBio --skill affinity-proteomics","ready":true,"targets":[{"id":"openagentskill-cli","label":"CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.2.1/openagentskill-0.2.1.tgz install clawbio-affinity-proteomics"},{"id":"codex","label":"Codex","kind":"agent-prompt","value":"Install the \"affinity-proteomics\" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics. 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Report success only after the skill is installed and a minimal verification passes."}],"handoff_url":"https://www.openagentskill.com/api/skills/clawbio-affinity-proteomics/install","manifest_url":"https://www.openagentskill.com/api/registry/manifest/clawbio-affinity-proteomics"},"trust":{"score":75,"label":"Strong shortlist","version":"trust-score-v4","install_policy":"human_review_before_install","evidence":{"stars":"1.1K GitHub stars","repoActivity":"1.1K stars, 257 forks","lastPushed":"Pushed today","license":"MIT","repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics","install":"npx skills add ClawBio/ClawBio --skill affinity-proteomics","installSafety":"standard package or runtime install path","permissionSurface":"shell or command execution, filesystem or document access","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet"},"outcome_evidence":{"total":0,"successes":0,"failures":0,"not_relevant":0,"success_rate":null,"recent_success_rate":null,"recent_failure_rate":null,"install_attempts":0,"install_success_rate":null,"risk_blocked":0,"setup_required":0,"avg_output_quality":null,"production_outcomes":0,"last_outcome_at":null,"label":"No agent outcome data yet"},"auto_install":{"allowed":false,"sandbox_required":true,"reason":"Human review or sandbox validation is required before automatic installation."},"best_for":["automation","agent-skill"],"known_risks":["The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; installation instructions are provided but not guaranteed to work offline.","Financial research output is not financial advice; require human review before any live investment decision.","Quality score needs review","Permission surface needs review: shell or command execution, filesystem or document access","Permission surface: shell or command execution, filesystem or document access"]},"agent_proven":{"version":"agent-proven-v1","score":0,"tier":"unproven","label":"Needs first agent run","summary":"No agent outcome reports yet. 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the full script was not fully inspected for edge-case handling.","Financial research output is not financial advice; require human review before any live investment decision.","Quality score needs review","Permission surface needs review: shell or command execution, filesystem or document access","Permission surface: shell or command execution, filesystem or document access"]},"safety_gate":{"tier":"experimental","label":"Experimental","auto_install_policy":"review","auto_install_allowed":false,"human_review_required":true,"blocked":false,"recommended_action":"Test manually in an isolated workspace and compare against safer alternatives."},"quality":{"score":77,"label":"Strong"},"supply":{"track":"Research and knowledge work","scenario":"Research agents","maintenance":"Pushed today","risk":"Needs review"},"alternative_skills":[],"do_not_use_when":["teams that need a vendor-supported SLA","production agents without a repository review","The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; 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Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-affinity-proteomics\",\"task\":\"Install affinity-proteomics\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"cursor","label":"Cursor","kind":"agent-prompt","value":"Turn \"affinity-proteomics\" from https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-affinity-proteomics\",\"task\":\"Install affinity-proteomics\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."}],"handoff_url":"https://www.openagentskill.com/api/skills/clawbio-affinity-proteomics/install","manifest_url":"https://www.openagentskill.com/api/registry/manifest/clawbio-affinity-proteomics"},"trust":{"score":75,"label":"Strong shortlist","version":"trust-score-v4","install_policy":"human_review_before_install","evidence":{"stars":"1.1K GitHub stars","repoActivity":"1.1K stars, 257 forks","lastPushed":"Pushed today","license":"MIT","repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics","install":"npx skills add ClawBio/ClawBio --skill affinity-proteomics","installSafety":"standard package or runtime install path","permissionSurface":"shell or command execution, filesystem or document access","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet"},"outcome_evidence":{"total":0,"successes":0,"failures":0,"not_relevant":0,"success_rate":null,"recent_success_rate":null,"recent_failure_rate":null,"install_attempts":0,"install_success_rate":null,"risk_blocked":0,"setup_required":0,"avg_output_quality":null,"production_outcomes":0,"last_outcome_at":null,"label":"No agent outcome data yet"},"auto_install":{"allowed":false,"sandbox_required":true,"reason":"Human review or sandbox validation is required before automatic installation."},"best_for":["automation","agent-skill"],"known_risks":["The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; installation instructions are provided but not guaranteed to work offline.","Financial research output is not financial advice; require human review before any live investment decision.","Quality score needs review","Permission surface needs review: shell or command execution, filesystem or document access","Permission surface: shell or command execution, filesystem or document access"]},"agent_proven":{"version":"agent-proven-v1","score":0,"tier":"unproven","label":"Needs first agent run","summary":"No agent outcome reports yet. Use Resolve, run one narrow sandbox task, then report the result.","metrics":{"totalOutcomes":0,"successfulOutcomes":0,"failedOutcomes":0,"installAttempts":0,"installSuccessRate":null,"successRate":null,"recentSuccessRate":null,"recentFailureRate":null,"riskBlocked":0,"setupRequired":0,"notRelevant":0,"avgOutputQuality":null,"avgTimeToUsefulMs":null,"productionOutcomes":0,"humanReviewRequired":0,"uniqueAgents":0,"lastOutcomeAt":null},"signals":[],"penalties":["No real agent outcome evidence yet"]},"audit":{"score":81,"risk_level":"needs_review","risk_label":"Needs review","warnings":["Permission surface may require sandboxing","Financial research output is not financial advice; require human review before any live investment decision","The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; installation instructions are provided but not guaranteed to work offline.","The SKILL.md excerpt is truncated in the review, but the provided content is comprehensive; the full script was not fully inspected for edge-case handling.","Financial research output is not financial advice; require human review before any live investment decision.","Quality score needs review","Permission surface needs review: shell or command execution, filesystem or document access","Permission surface: shell or command execution, filesystem or document access"]},"safety_gate":{"tier":"experimental","label":"Experimental","auto_install_policy":"review","auto_install_allowed":false,"human_review_required":true,"blocked":false,"recommended_action":"Test manually in an isolated workspace and compare against safer alternatives."},"quality":{"score":77,"label":"Strong"},"supply":{"track":"Research and knowledge work","scenario":"Research agents","maintenance":"Pushed today","risk":"Needs review"},"alternative_skills":[],"do_not_use_when":["teams that need a vendor-supported SLA","production agents without a repository review","The skill depends on the `somadata` package for SomaLogic ADAT parsing, which may not be available in all environments; installation instructions are provided but not guaranteed to work offline.","No OpenAgentSkill engagement data yet","High-risk permission hints: Shell or command execution","Permission surface may require sandboxing","Financial research output is not financial advice; require human review before any live investment decision","The SKILL.md excerpt is truncated in the review, but the provided content is comprehensive; the full script was not fully inspected for edge-case handling."],"agent_contract":{"task_input":"Use affinity-proteomics in an agent workflow","recommended_action":"Test manually in an isolated workspace and compare against safer alternatives.","install_policy":"review","minimum_review_before_use":["Trust: 75/100 Strong shortlist","Audit: 81/100 Needs review","Safety: 49/100 Avoid automatic install","Review repository, license, install command, and permission surface before production use."],"expected_agent_output":{"selected_skill":"clawbio-affinity-proteomics (affinity-proteomics)","install_command":"npx skills add ClawBio/ClawBio --skill affinity-proteomics","risk_summary":"Needs review; Experimental; Review before production","verification_result":"Report the smallest successful task, files touched, warnings, and any missing setup."}},"outcome_feedback":{"endpoint":"https://www.openagentskill.com/api/agent/outcome","method":"POST","requires_resolve_event_id":true,"event_id_source":"Use install_receipt.outcome_feedback.event_id or feedback.event_id returned by /api/agent/resolve for the current task.","expected_outcomes":["success","failed","not_relevant","blocked_by_risk","setup_required"],"payload_template":{"event_id":"<install_receipt.outcome_feedback.event_id or feedback.event_id from /api/agent/resolve>","skill_slug":"clawbio-affinity-proteomics","task":"Use affinity-proteomics in an agent workflow","agent":"codex","outcome":"success","install_used":true,"risk_blocked":false,"setup_required":false,"task_success":true,"output_quality":4,"error_type":null,"human_review_required":false,"workspace":"sandbox","time_to_useful_ms":120000,"notes":"Report the smallest successful task, setup friction, files touched, and risk notes."}},"endpoints":{"web":"https://www.openagentskill.com/skills/clawbio-affinity-proteomics","api":"https://www.openagentskill.com/api/agent/skills/clawbio-affinity-proteomics","audit":"https://www.openagentskill.com/skills/clawbio-affinity-proteomics/audit","eval":"https://www.openagentskill.com/api/agent/evals?slug=clawbio-affinity-proteomics&task=Use%20affinity-proteomics%20in%20an%20agent%20workflow&max_risk=medium","resolve":"https://www.openagentskill.com/api/agent/resolve?task=Use%20affinity-proteomics%20in%20an%20agent%20workflow&agent=codex&max_risk=medium","receipt":"https://www.openagentskill.com/api/agent/receipt?task=Use%20affinity-proteomics%20in%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text","install":"https://www.openagentskill.com/api/skills/clawbio-affinity-proteomics/install","manifest":"https://www.openagentskill.com/api/registry/manifest/clawbio-affinity-proteomics"}},"platforms":["Claude Code"],"use_cases":[{"slug":"research-agents","title":"Research agents","url":"https://www.openagentskill.com/use-cases/research-agents"},{"slug":"workflow-automation","title":"Workflow automation","url":"https://www.openagentskill.com/use-cases/workflow-automation"},{"slug":"document-processing","title":"Document processing","url":"https://www.openagentskill.com/use-cases/document-processing"},{"slug":"browser-automation","title":"Browser automation","url":"https://www.openagentskill.com/use-cases/browser-automation"}],"install":"npx skills add ClawBio/ClawBio --skill affinity-proteomics","install_targets":[{"id":"openagentskill-cli","label":"CLI","title":"OpenAgentSkill CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.2.1/openagentskill-0.2.1.tgz install clawbio-affinity-proteomics","description":"Resolve policy, run the source installer safely, and report a verified install receipt.","copyLabel":"Copy command"},{"id":"codex","label":"Codex","title":"Codex install prompt","kind":"agent-prompt","value":"Install the \"affinity-proteomics\" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-affinity-proteomics\",\"task\":\"Install affinity-proteomics\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes.","description":"Give Codex a repo-aware install prompt when the skill is not available through a local CLI.","copyLabel":"Copy prompt"},{"id":"claude-code","label":"Claude Code","title":"Claude Code skill prompt","kind":"agent-prompt","value":"Add \"affinity-proteomics\" as a Claude Code skill from https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-affinity-proteomics\",\"task\":\"Install affinity-proteomics\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes.","description":"Use this prompt to ask Claude Code to add the skill and explain the local activation steps.","copyLabel":"Copy prompt"},{"id":"cursor","label":"Cursor","title":"Cursor rule prompt","kind":"agent-prompt","value":"Turn \"affinity-proteomics\" from https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-affinity-proteomics\",\"task\":\"Install affinity-proteomics\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes.","description":"Use this when installing as Cursor project rules or reusable agent instructions.","copyLabel":"Copy prompt"}],"repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics","github_repo":"ClawBio/ClawBio","version":"1.0.0","license":"MIT","updated_at":"2026-08-23T13:24:42.79986+00:00","canonical_key":"clawbio/clawbio#skills/affinity-proteomics","recommendation_reasons":["Useful GitHub adoption: 1,112 stars","Install handoff is available","Repository freshness signal is available"],"urls":{"web":"https://www.openagentskill.com/skills/clawbio-affinity-proteomics","api":"https://www.openagentskill.com/api/agent/skills/clawbio-affinity-proteomics","install_api":"https://www.openagentskill.com/api/skills/clawbio-affinity-proteomics/install","audit":"https://www.openagentskill.com/skills/clawbio-affinity-proteomics/audit","repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/affinity-proteomics"},"meta":{"endpoint":"/api/registry/manifest/{slug}","canonical_agent_endpoint":"/api/agent/skills/clawbio-affinity-proteomics","agent_friendly":true,"api_version":"1.0","generated_at":"2026-08-23T23:34:49.313Z"}}