{"slug":"yha9806-audit","name":"audit","description":"Check thesis chapters for consistency before submission — contradictory numbers, terminology drift, and broken cross-references.","long_description":"---\nname: audit\ndescription: Check thesis chapters for consistency before submission — contradictory numbers, terminology drift, and broken cross-references.\nallowed-tools: Read, Glob, Grep, Bash\n---\n\n# /audit — Thesis Consistency Audit Skill\n\n## Purpose\n\nScan all thesis chapters for internal data consistency issues: contradictory numbers, inconsistent terminology, broken cross-references, and arithmetic errors. This is a pre-submission quality check.\n\n## Trigger Words\n\nThis skill activates on: `audit`, `consistency check`, `check numbers`, `/audit`.\n\n## Workflow\n\n1. **Scan all chapter files** in the `chapters/` directory using Glob. Read each file to extract quantitative claims, terminology, and cross-references.\n\n2. **Check the following categories:**\n\n   **A. Numerical consistency**\n   - The same statistic (e.g., accuracy, sample size, p-value) cited in multiple chapters must have the same value.\n   - Percentages in a distribution must sum to 100% (with tolerance of +/-1% for rounding).\n   - Counts (e.g., \"42 models\") must match between chapters.\n\n   **B. Terminological consistency**\n   - The same concept must use the same term throughout. Flag cases where synonyms are used inconsistently (e.g., \"structured review\" vs \"systematic review\" for the same concept).\n   - Abbreviations must be defined on first use in each chapter.\n\n   **C. Cross-reference validity**\n   - References to other sections (e.g., \"as discussed in Section 3.2\") must point to sections that exist.\n   - References to tables and figures must match actual table/figure numbers.\n   - Forward references (\"Chapter 6 will show...\") must be fulfilled.\n\n   **D. Citation checks — disabled in this release (disclosed gap)**\n\n   The deterministic citation tiers previously run here are disabled: measured\n   against realistic thesis text they produced false high-severity \"phantom\n   citation\" findings on ordinary parentheticals, missed multi-word\n   institutional authors, and flagged the comma form that Cite Them Right\n   Harvard mandates. Until the checker meets a measured, disclosed\n   false-positive rate, do not run it and do not present citation\n   consistency as audited. Reference integrity is still covered by\n   `/verify-refs` (BibTeX records) and by the notes-file contract lint.\n\n   **E. Claim positioning (deterministic, runs before F and G — positioning\n   is not repairable after review; style is)**\n\n   ```\n   python3 scripts/audit-claim-positioning.py --base-dir chapters --bib references.bib --json\n   ```\n\n   (omit `--bib` when the project has no bibliography file). Report every\n   issue it returns: `unsourced-keyword` and `bare-novelty` as **High** — a\n   field's vocabulary in use without its literature, or a novelty claim in a\n   paragraph that shows no search — `uncited-method` and `dangling-entry` as\n   **Medium**. The tool checks that a source is *present* near a claim, never\n   that it is the right one, and it cannot tell whether a citing sentence\n   says what its source says; do not present its silence as either.\n\n   **F. Citation fidelity — does the citing sentence match its source?**\n\n   ```\n   node scripts/audit-citation-fidelity.mjs --base-dir . --json\n   ```\n\n   (needs the guards built once: `npm --prefix guards install && npm --prefix guards run build`.)\n   Report `quote-not-in-source` and `page-mismatch` as **High** — a quoted\n   span that is not verbatim in the source's notes or PDF, or a page that the\n   source contradicts — and `notes-missing` as **Medium**. `low-overlap` is\n   **experimental**: list it under Measurements as a prompt to re-read, never\n   as an issue; no false-positive rate has been measured for it yet. State\n   the tool's own limit in the report verbatim: it does **not** detect a\n   sentence that inverts its source in the source's own words — the failure\n   that mattered most on a real manuscript — and that still requires\n   reading. Every finding here is a proxy; a finding is a reason to open the\n   source, not a verdict.\n\n   **G. Prose fingerprint (measurement only; skip when no baseline exists)**\n\n   Only when the project holds a baseline corpus of its *own* reference\n   PDFs (`literature/`, twenty or more, the author's own papers excluded):\n\n   ```\n   python3 scripts/audit-prose-fingerprint.py --target chapters --baseline literature --exclude '<author-surname>*'\n   ```\n\n   Report the distributions under **Measurements**, never as issues: this is\n   Advisory by nature. Out-of-range is the hard signal, a percentile is a\n   soft one, and clustering matters more than count. Method and stop rules:\n   `references/prose-polish-method.md`.\n\n3. **Output the audit report** using the format below.\n\n## Output Format\n\n```\n## Audit Report -- {YYYY-MM-DD}\n\n### Summary\n\n- **Critical**: {N} issues (contradictory data)\n- **High**: {N} issues (broken references, missing definitions)\n- **Medium**: {N} issues (terminology inconsistency, minor arithmetic)\n\n### Issues\n\n| # | Severity | Category | Location | Issue | Current | Expected |\n|---|----------|----------|----------|-------|---------|----------|\n| 1 | Critical | Numerical | Ch3 s3.2, Ch5 s5.4 | Sample size differs | 120 (Ch3) vs 125 (Ch5) | Should be consistent |\n| 2 | High | Cross-ref | Ch4 s4.1 | Ref to \"Section 3.7\" | Section 3.7 | Section does not exist |\n\n### Measurements (category G when a baseline exists; category F's experimental low-overlap prompts)\n\n{Per metric: rate, clustering (gap CV), longest gap — with the baseline's\nrange and where the manuscript sits. Numbers, not verdicts.}\n\n### Recommendations\n\n{Grouped by severity, brief notes on how to resolve each issue.}\n```\n\n## Severity Levels\n\n- **Critical**: The same quantitative claim has different values in different chapters. This directly undermines thesis credibility.\n- **High**: Broken cross-references, undefined abbreviations on first use, missing table/figure numbers.\n- **Medium**: Inconsistent terminology that does not cause factual error, minor rounding discrepancies within tolerance.\n\n## Constraints\n\n1. **Never auto-fix.** List all issues for the user to review and decide. The user may choose to fix selectively.\n2. **No emoji** in output.\n3. **Report all instances**, not just the first occurrence. If a statistic appears in 4 chapters with 2 different values, list all 4 locations.\n4. **Be specific** about locations. Provide chapter number, section number, and surrounding context so the user can find the issue quickly.\n5. **Do not flag stylistic issues.** This skill checks data consistency, not prose quality.\n","tagline":"Check thesis chapters for consistency before submission — contradictory numbers, terminology drift, and broken cross-references.","category":"security","tags":["agent-skill"],"author":"yha9806","verified":false,"attribution":{"status":"registry_indexed","statusLabel":"Registry indexed","shortLabel":"REGISTRY INDEXED","sourceLabel":"recursive skill source sync","sourceDetail":"yha9806/academic-writing-toolkit","creatorName":"yha9806","creatorUrl":"https://github.com/yha9806","sourceUrl":"https://github.com/yha9806/academic-writing-toolkit/tree/main/.claude/skills/audit","indexedBy":"OpenAgentSkill community index","claimUrl":"https://www.openagentskill.com/skills/yha9806-audit#claim-this-skill","claimCta":"Claim this skill","trustNote":"This listing was indexed from public sources and is not marked official until a maintainer claim is approved.","publicNote":"Attribution links to the public repository or creator profile. Creators can claim the listing to update ownership signals."},"stats":{"stars":34,"forks":6,"verified_installs":0,"successful_runs":0,"total_outcomes":0,"rating":0,"review_count":0,"quality_score":34.21},"quality":{"score":62,"tier":"promising","label":"Promising","summary":"Useful candidate, but compare it with alternatives before adopting.","signals":[{"label":"GitHub stars","value":"34","tone":"neutral"},{"label":"Freshness","value":"16d ago","tone":"positive"},{"label":"Install ready","value":"Yes","tone":"positive"},{"label":"License","value":"MIT","tone":"neutral"}],"warnings":["Low GitHub adoption signal","The skill uses Bash to run Python and Node scripts, which could be a vector for malicious code if the scripts are compromised, but the scripts are part of the repository and the skill does not instruct downloading untrusted content."]},"trust":{"version":"trust-score-v5","score":60,"base_score":68,"outcome_confidence":0,"tier":"review","label":"Sandbox only","summary":"Useful candidate with missing or mixed trust signals. Keep it in an isolated workspace until the outcome loop proves task fit.","recommendedAction":"Run only in a sandbox and compare close alternatives before using it for real work.","decision":{"install_policy":"human_review_before_install","auto_install_allowed":false,"human_review_required":true,"sandbox_first":true,"agent_action":"Compare alternatives before installing.","reasoning":["60/100 Trust Score v5","68/100 Trust Score v4 baseline","Needs more real agent outcomes before unattended install","Install path is missing","Review before production"],"review_required_when":["The workspace contains production secrets, payments, private customer data, or irreversible actions.","The install command requests shell, network, credential, database, or broad filesystem access.","Outcome evidence is missing, recently failed, or required human review.","Production credentials, payments, or irreversible account changes without explicit human review","Sensitive private data before reviewing repository code, license, and permission surface","Automatic installation in a production workspace"]},"dimensions":[{"id":"github_adoption","label":"GitHub adoption","score":48,"weight":0.13,"status":"warn","detail":"34 GitHub stars"},{"id":"repo_activity","label":"Stars/forks activity","score":43,"weight":0.08,"status":"warn","detail":"34 stars, 6 forks; 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issue activity unavailable in current metadata"},{"status":"pass","label":"Recent maintenance","detail":"16d since push"},{"status":"pass","label":"License clarity","detail":"MIT"},{"status":"pass","label":"README/SKILL.md completeness","detail":"Metadata includes enough usage and workflow context"},{"status":"info","label":"Dependency/runtime risk","detail":"command execution surface"},{"status":"pass","label":"Install availability","detail":"npx skills add yha9806/academic-writing-toolkit --skill audit"},{"status":"pass","label":"Install command safety","detail":"standard package or runtime install path"},{"status":"info","label":"Permission surface","detail":"shell or command execution, filesystem or document access"},{"status":"pass","label":"Repository evidence","detail":"https://github.com/yha9806/academic-writing-toolkit/tree/main/.claude/skills/audit"},{"status":"info","label":"Review status","detail":"AI review data available"},{"status":"info","label":"Agent Proven outcomes","detail":"No agent outcome data yet"},{"status":"warn","label":"Ownership","detail":"No approved owner claim yet"},{"status":"info","label":"OpenAgentSkill usage","detail":"No local usage activity yet"},{"status":"info","label":"Agent outcomes","detail":"No agent outcome data yet"}],"strengths":["Legacy review approval recorded","Install path is available","Repository evidence is available","Recently maintained repository","Install command has no obvious high-risk pattern","Outcome loop is ready but needs first real agent run"],"warnings":["The skill uses Bash to run Python and Node scripts, which could be a vector for malicious code if the scripts are compromised, but the scripts are part of the repository and the skill does not instruct downloading untrusted content.","Financial research output is not financial advice; require human review before any live investment decision.","Low GitHub adoption signal","Quality score needs review","GitHub adoption: 34 GitHub stars","Stars/forks activity: 34 stars, 6 forks; issue activity unavailable in current metadata","No real agent outcome reports yet","Human review required before unattended installation"],"evidence":{"stars":"34 GitHub stars","repoActivity":"34 stars, 6 forks","lastPushed":"16d since push","license":"MIT","repository":"https://github.com/yha9806/academic-writing-toolkit/tree/main/.claude/skills/audit","install":"The tracked source changed or could not be synchronized. 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Review the current source before installing.","Repository evidence is available","License is declared","No Agent Proven outcome evidence yet","16d since push","Financial domain: human review is required before use in a live investment workflow.","Trust Score v5 requires review or sandbox-only use before install."]},"agentCompatibility":["Codex","Claude Code","Cursor","OpenAgentSkill CLI"],"riskSummary":{"level":"medium","label":"Review before production","notes":["The skill uses Bash to run Python and Node scripts, which could be a vector for malicious code if the scripts are compromised, but the scripts are part of the repository and the skill does not instruct downloading untrusted content.","Financial research output is not financial advice; require human review before any live investment decision.","Low GitHub adoption signal","Quality score needs review","GitHub adoption: 34 GitHub stars"]},"outcomeEvidence":{"total":0,"successes":0,"failures":0,"notRelevant":0,"successRate":null,"installAttempts":0,"riskBlocked":0,"setupRequired":0,"installSuccessRate":null,"avgOutputQuality":null,"avgTimeToUsefulMs":null,"productionOutcomes":0,"humanReviewRequired":0,"recentSuccessRate":null,"recentFailureRate":null,"uniqueAgents":0,"agentProvenScore":0,"agentProvenLabel":"Needs first agent run","lastOutcomeAt":null,"label":"No agent outcome data yet"},"autoInstall":{"allowed":false,"sandboxRequired":true,"policy":"human_review_before_install","reason":"Compare alternatives before installing."},"outcome_loop":{"version":"openagentskill-agent-outcome-v4","required_after_install":true,"endpoint":"/api/agent/outcome","method":"POST","event_id_source":"feedback.event_id, install_receipt.resolve_event_id, or decision_packet.outcome_feedback.event_id","expected_outcomes":["success","failed","not_relevant","blocked_by_risk","setup_required"],"required_fields":["event_id","skill_slug","task"],"quality_fields":["task_success","output_quality","error_type","human_review_required","used_in_production","workspace","evidence_url","time_to_useful_ms","source_version"],"ranking_inputs_updated":["Trust Score v5 outcome confidence","Agent Proven Score","Resolve ranking task-fit evidence","Skill detail machine-readable metadata","Outcome leaderboard"]},"agent_contract":{"suited_tasks":["security","agent-skill"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI"],"install_command":null,"trust_score":60,"trust_version":"trust-score-v5","risk_level":"medium","do_not_use_when":["Production credentials, payments, or irreversible account changes without explicit human review","Sensitive private data before reviewing repository code, license, and permission surface","Automatic installation in a production workspace","Autonomous investment, trading, tax, or suitability decisions without a qualified human review"],"before_install":["Read the audit page and machine-readable metadata.","Confirm the install command, license, and permission surface fit the workspace.","Get explicit human approval or choose an alternative before installing."],"after_run":["Report the outcome to /api/agent/outcome using the resolve event id.","Include output_quality, workspace, human_review_required, and evidence_url when available.","Re-resolve before broad production rollout."]},"bestFor":["security","agent-skill"],"doNotUseFor":["Production credentials, payments, or irreversible account changes without explicit human review","Sensitive private data before reviewing repository code, license, and permission surface","Automatic installation in a production workspace","Autonomous investment, trading, tax, or suitability decisions without a qualified human review"],"knownRisks":["The skill uses Bash to run Python and Node scripts, which could be a vector for malicious code if the scripts are compromised, but the scripts are part of the repository and the skill does not instruct downloading untrusted content.","Financial research output is not financial advice; require human review before any live investment decision.","Low GitHub adoption signal","Quality score needs review","GitHub adoption: 34 GitHub stars","Stars/forks activity: 34 stars, 6 forks; issue activity unavailable in current metadata"],"backward_compatible":{"trust_score_v4":{"version":"trust-score-v4","score":68,"tier":"review","label":"Manual review","summary":"Potentially useful, but at least one trust signal needs human inspection."}}},"trust_score_v5":{"version":"trust-score-v5","score":60,"base_score":68,"outcome_confidence":0,"tier":"review","label":"Sandbox only","summary":"Useful candidate with missing or mixed trust signals. 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Review the current source before installing.","installSafety":"standard package or runtime install path","permissionSurface":"shell or command execution, filesystem or document access","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet","agentProvenScore":0,"outcomeConfidence":"0%","installPolicy":"human_review_before_install"},"installReadiness":{"ready":false,"command":null,"policy":"human_review_before_install","label":"Human review before install","notes":["The tracked source changed or could not be synchronized. 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