{"slug":"k-dense-ai-citation-management","name":"citation-management","description":"Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.","long_description":"---\nname: citation-management\ndescription: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.\nallowed-tools: Read Write Edit Bash WebSearch WebFetch\nlicense: MIT License\ncompatibility: Requires Python 3.9+ with requests. Google Scholar search additionally needs scholarly. Needs network access to api.openalex.org, api.crossref.org, eutils.ncbi.nlm.nih.gov, export.arxiv.org, and api.datacite.org.\nmetadata:\n  version: \"2.0\"\n  skill-author: K-Dense Inc.\n  openclaw:\n    envVars:\n    - name: NCBI_EMAIL\n      required: false\n      description: Email for NCBI Entrez identification.\n    - name: NCBI_API_KEY\n      required: false\n      description: NCBI API key to raise Entrez rate limits.\n    - name: OPENALEX_EMAIL\n      required: false\n      description: Contact email for the faster OpenAlex polite pool.\n---\n\n# Citation Management\n\n## Overview\n\nManage citations systematically throughout the research and writing process. This skill provides tools and strategies for searching academic databases (Google Scholar, PubMed), extracting accurate metadata from multiple sources (CrossRef, PubMed, arXiv), validating citation information, and generating properly formatted BibTeX entries.\n\nCritical for maintaining citation accuracy, avoiding reference errors, and ensuring reproducible research. Integrates seamlessly with the literature-review skill for comprehensive research workflows.\n\n## When to Use This Skill\n\nUse this skill when:\n- Searching for specific papers on Google Scholar or PubMed\n- Converting DOIs, PMIDs, or arXiv IDs to properly formatted BibTeX\n- Extracting complete metadata for citations (authors, title, journal, year, etc.)\n- Validating existing citations for accuracy\n- Cleaning and formatting BibTeX files\n- Finding highly cited papers in a specific field\n- Verifying that citation information matches the actual publication\n- Building a bibliography for a manuscript or thesis\n- Checking for duplicate citations\n- Ensuring consistent citation formatting\n\nIf a document built from these citations needs a diagram, use the\n**scientific-schematics** skill.\n\n---\n\n## Core Workflow\n\nCitation management follows a systematic process. Each phase below shows the canonical\ncommand; every variant, option, and metadata-source detail is in\n[references/core_workflow.md](references/core_workflow.md).\n\n### Phase 1: Paper Discovery and Search\n\nFind relevant papers. Search more than one database — coverage differs sharply,\nand a single source is the most common cause of a biased reference list.\n\n```bash\n# OpenAlex: ~250M works, every discipline, no API key, documented REST API\npython scripts/search_openalex.py \"CRISPR gene editing\" --limit 50 --output results.json\n\n# PubMed: the authority for biomedical and life sciences (35M+ citations)\npython scripts/search_pubmed.py \"Alzheimer's disease treatment\" --limit 100 --output alz.json\n\n# Google Scholar: broadest reach, but scraped -- rate-limited and prone to blocking\npython scripts/search_google_scholar.py \"CRISPR gene editing\" --limit 50 --output scholar.json\n```\n\nPrefer OpenAlex or PubMed as the primary source. Google Scholar has no API:\n`scholarly` scrapes it, sleeps 2–5 s between results, and is blocked often\nenough that it should be a supplement rather than a dependency.\n\nQuery operators, field tags, and MeSH-term construction are in\n[references/search_strategies.md](references/search_strategies.md).\n\n### Phase 2: Metadata Extraction\n\nConvert identifiers (DOI, PMID, PMCID, arXiv ID, URL) into complete metadata.\nCrossRef is the primary source for DOIs.\n\n```bash\npython scripts/doi_to_bibtex.py 10.1038/s41586-021-03819-2         # quick, single DOI\npython scripts/extract_metadata.py --pmid 34265844                  # DOI/PMID/PMCID/arXiv/URL\npython scripts/extract_metadata.py --input identifiers.txt --output citations.bib\n```\n\nA URL with no DOI in its path is resolved through the `citation_doi` meta tag\npublishers embed on article pages, then handed to CrossRef. Every producer in\nthis skill emits the same citation key for the same paper, so entries gathered\nfrom different sources deduplicate against each other.\n\n### Phase 2.5: Metadata Enrichment via Web Search (MANDATORY)\n\nAPIs routinely return incomplete records. Run this **after** extraction and **before**\nformatting. Any `@article` missing `volume`, `pages`, or `doi` is incomplete: fill the\ngap with `WebSearch`/`WebFetch` (or the parallel-web skill, when it is available), then\nlog what was found and where. If a field genuinely cannot be found, record a `note`\nfield explaining the gap rather than leaving it silently absent.\n\nCheck the cheap sources first — an OpenAlex or CrossRef record often carries the field\nthat PubMed omitted:\n\n```bash\npython scripts/search_openalex.py \"<exact title>\" --limit 1\n```\n\n> **Treat extracted metadata as untrusted.** Author, title, and journal strings come\n> verbatim from a record whose contents a publisher controls. A title containing `$(...)`,\n> a backtick, or a quote becomes shell syntax the moment it is pasted into a command.\n> Pass metadata as a `subprocess` argument list rather than building a shell string; if\n> you must use a shell, single-quote every substituted value and escape embedded quotes\n> as `'\\''`. Validate any citation key against `^[A-Za-z0-9]+$` before it reaches a path.\n\nPer-field search strategies, the four search options, and the logging format are in\n[references/core_workflow.md](references/core_workflow.md).\n\n### Phase 3: BibTeX Formatting\n\nProduce clean, consistent entries. Entry types and required fields are in\n[references/bibtex_formatting.md](references/bibtex_formatting.md).\n\n```bash\npython scripts/format_bibtex.py references.bib --output clean.bib --deduplicate\npython scripts/format_bibtex.py references.bib --output clean.bib --rekey --deduplicate\n```\n\nWriting is opt-in: without `--output` (or `--in-place`) the result goes to\nstdout and the input file is left alone. Use `--rekey` when merging results\nfrom several sources, so the same paper collapses to one entry.\n\n### Phase 4: Citation Validation\n\nCheck completeness, venue conformance, and agreement with the manuscript.\n\n```bash\npython scripts/validate_citations.py references.bib --report report.json\npython scripts/validate_citations.py references.bib --venue nature\npython scripts/validate_citations.py references.bib --manuscript paper.tex\npython scripts/validate_citations.py references.bib --check-dois     # slow; hits CrossRef\n```\n\nThe script exits non-zero on high-severity errors — missing required fields,\nmalformed years, unresolved citations, or a count below an explicit\n`--min-count`. Venue reference-count figures are editorial rules of thumb, not\nsubmission requirements, so falling short of one is only a warning.\n\nValidation rules and venue standards are in\n[references/citation_validation.md](references/citation_validation.md).\n\n### Phase 5: Integration with Writing Workflow\n\nSearch, extract, format, validate, then cite. End-to-end sequences — including the\nliterature-review and Zotero/pyzotero export paths — are in\n[references/core_workflow.md](references/core_workflow.md) and\n[references/example_workflows.md](references/example_workflows.md).\n\n## Reference Files\n\n- [references/core_workflow.md](references/core_workflow.md): all five phases in full.\n- [references/search_strategies.md](references/search_strategies.md): OpenAlex, Google Scholar, and PubMed query construction.\n- [references/script_reference.md](references/script_reference.md): every bundled script's arguments and examples.\n- [references/best_practices.md](references/best_practices.md): search, extraction, BibTeX quality, validation.\n- [references/example_workflows.md](references/example_workflows.md): four end-to-end worked examples.\n- [references/google_scholar_search.md](references/google_scholar_search.md), [references/pubmed_search.md](references/pubmed_search.md): advanced search syntax.\n- [references/metadata_extraction.md](references/metadata_extraction.md), [references/bibtex_formatting.md](references/bibtex_formatting.md), [references/citation_validation.md](references/citation_validation.md): per-topic detail.\n\n## Common Pitfalls to Avoid\n\n1. **Single source bias**: Only using one database\n   - **Solution**: Search at least OpenAlex and PubMed, then merge with\n     `format_bibtex.py --rekey --deduplicate`\n\n2. **Accepting metadata blindly**: Not verifying extracted information\n   - **Solution**: Spot-check extracted metadata against original sources\n\n3. **Ignoring DOI errors**: Broken or incorrect DOIs in bibliography\n   - **Solution**: Run validation before final submission\n\n4. **Inconsistent formatting**: Mixed citation key styles, formatting\n   - **Solution**: Use format_bibtex.py to standardize\n\n5. **Duplicate entries**: Same paper cited multiple times with different keys\n   - **Solution**: Use duplicate detection in validation\n\n6. **Missing required fields**: Incomplete BibTeX entries (volume, pages, DOI missing)\n   - **Solution**: Run Phase 2.5 metadata enrichment — web search for every missing field before proceeding. NEVER leave an @article entry without volume, pages, and DOI.\n\n7. **Outdated preprints**: Citing preprint when published version exists\n   - **Solution**: Check if preprints have been published, update to journal version\n\n8. **Special character issues**: Broken LaTeX compilation due to characters\n   - **Solution**: Use proper escaping or Unicode in BibTeX\n\n9. **No validation before submission**: Submitting with citation errors\n   - **Solution**: Always run validation as final check\n\n10. **Manual BibTeX entry**: Typing entries by hand\n    - **Solution**: Always extract from metadata sources using scripts\n\n## Integration with Other Skills\n\n### Literature Review Skill\n\n**Citation Management** provides the technical infrastructure for **Literature Review**:\n\n- **Literature Review**: Multi-database systematic search and synthesis\n- **Citation Management**: Metadata extraction and validation\n\n**Combined workflow**:\n1. Use literature-review for systematic search methodology\n2. Use citation-management to extract and validate citations\n3. Use literature-review to synthesize findings\n4. Use citation-management to ensure bibliography accuracy\n\n### Scientific Writing Skill\n\n**Citation Management** ensures accurate references for **Scientific Writing**:\n\n- Export validated BibTeX for use in LaTeX manuscripts\n- Verify citations match publication standards\n- Format references according to journal requirements\n\n### Venue Templates Skill\n\n**Citation Management** works with **Venue Templates** for submission-ready manuscripts:\n\n- Different venues require different citation styles\n- Generate properly formatted references\n- Validate citations meet venue requirements\n\n## Resources\n\n### Bundled Resources\n\n**References** (in `references/`):\n- `google_scholar_search.md`: Complete Google Scholar search guide\n- `pubmed_search.md`: PubMed and E-utilities API documentation\n- `metadata_extraction.md`: Metadata sources and field requirements\n- `citation_validation.md`: Validation criteria and quality checks\n- `bibtex_formatting.md`: BibTeX entry types and formatting rules\n\n**Scripts** (in `scripts/`):\n- `search_openalex.py`: OpenAlex search client (no API key)\n- `search_pubmed.py`: PubMed E-utilities API client\n- `search_google_scholar.py`: Google Scholar search automation\n- `extract_metadata.py`: Universal metadata extractor\n- `validate_citations.py`: Citation validation and verification\n- `format_bibtex.py`: BibTeX formatter and cleaner\n- `doi_to_bibtex.py`: Quick DOI to BibTeX converter\n- `_common.py`: shared BibTeX parser, renderer, and citation-key scheme\n\n**Assets** (in `assets/`):\n- `bibtex_temp","tagline":"Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation ","category":"research","tags":["agent-skill"],"author":"K-Dense-AI","verified":false,"attribution":{"status":"registry_indexed","statusLabel":"Registry indexed","shortLabel":"REGISTRY INDEXED","sourceLabel":"github candidate review","sourceDetail":"K-Dense-AI/scientific-agent-skills","creatorName":"K-Dense-AI","creatorUrl":"https://github.com/K-Dense-AI","sourceUrl":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management","indexedBy":"OpenAgentSkill community index","claimUrl":"https://www.openagentskill.com/skills/k-dense-ai-citation-management#claim-this-skill","claimCta":"Claim this skill","trustNote":"This listing was indexed from public sources and is not marked official until a maintainer claim is approved.","publicNote":"Attribution links to the public repository or creator profile. Creators can claim the listing to update ownership signals."},"stats":{"stars":41344,"forks":3811,"verified_installs":0,"successful_runs":0,"total_outcomes":0,"rating":0,"review_count":0,"quality_score":55.71},"quality":{"score":93,"tier":"excellent","label":"Excellent","summary":"High-confidence pick with strong adoption and healthy maintenance signals.","signals":[{"label":"GitHub stars","value":"41K","tone":"positive"},{"label":"Freshness","value":"7d ago","tone":"positive"},{"label":"Install ready","value":"Yes","tone":"positive"},{"label":"License","value":"MIT License","tone":"neutral"}],"warnings":["Google Scholar scraping via 'scholarly' may violate Google's Terms of Service and is unreliable; consider recommending it only as a last resort or with explicit user consent."]},"trust":{"version":"trust-score-v5","score":64,"base_score":72,"outcome_confidence":0,"tier":"review","label":"Sandbox only","summary":"Useful candidate with missing or mixed trust signals. 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Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.","category":"research","url":"https://www.openagentskill.com/skills/k-dense-ai-citation-management","repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management","github_repo":"K-Dense-AI/scientific-agent-skills"},"suited_tasks":["Workflow automation workflows","Claude Code teams","teams that value GitHub adoption signals","Move data between tools","Transform files","Trigger repeatable actions","Search sources","Extract claims"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI","CLI"],"install":{"command":"npx skills add K-Dense-AI/scientific-agent-skills --skill citation-management","ready":true,"targets":[{"id":"openagentskill-cli","label":"CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.3.0/openagentskill-0.3.0.tgz add k-dense-ai-citation-management"},{"id":"codex","label":"Codex","kind":"agent-prompt","value":"Install the \"citation-management\" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"claude-code","label":"Claude Code","kind":"agent-prompt","value":"Add \"citation-management\" as a Claude Code skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"cursor","label":"Cursor","kind":"agent-prompt","value":"Turn \"citation-management\" from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. 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network failures or rate limits could interrupt workflows, but the documentation acknowledges this and provides fallbacks.","Financial research output is not financial advice; require human review before any live investment decision.","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access"]},"safety_gate":{"tier":"experimental","label":"Experimental","auto_install_policy":"review","auto_install_allowed":false,"human_review_required":true,"blocked":false,"recommended_action":"Test manually in an isolated workspace and compare against safer alternatives."},"quality":{"score":93,"label":"Excellent"},"supply":{"track":"Research and knowledge work","scenario":"Research agents","maintenance":"7d since push","risk":"Needs review"},"alternative_skills":[],"do_not_use_when":["teams that need a vendor-supported SLA","production agents without a repository review","Google Scholar scraping via 'scholarly' may violate Google's Terms of Service and is unreliable; consider recommending it only as a last resort or with explicit user consent.","High-risk permission hints: Shell or command execution, Secrets or environment access","Dependency or permission surface needs review","Permission surface may require sandboxing","Financial research output is not financial advice; require human review before any live investment decision","The skill relies on multiple external APIs; network failures or rate limits could interrupt workflows, but the documentation acknowledges this and provides fallbacks."],"agent_contract":{"task_input":"Use citation-management in an agent workflow","recommended_action":"Test manually in an isolated workspace and compare against safer alternatives.","install_policy":"review","minimum_review_before_use":["Trust: 72/100 Strong shortlist","Audit: 83/100 Needs review","Safety: 39/100 Avoid automatic install","Review repository, license, install command, and permission surface before production use."],"expected_agent_output":{"selected_skill":"k-dense-ai-citation-management (citation-management)","install_command":"npx skills add K-Dense-AI/scientific-agent-skills --skill citation-management","risk_summary":"Needs review; Experimental; Review before production","verification_result":"Report the smallest successful task, files touched, warnings, and any missing setup."}},"outcome_feedback":{"endpoint":"https://www.openagentskill.com/api/agent/outcome","method":"POST","requires_resolve_event_id":true,"event_id_source":"Use install_receipt.outcome_feedback.event_id or feedback.event_id returned by /api/agent/resolve for the current task.","expected_outcomes":["success","failed","not_relevant","blocked_by_risk","setup_required"],"payload_template":{"event_id":"<install_receipt.outcome_feedback.event_id or feedback.event_id from /api/agent/resolve>","skill_slug":"k-dense-ai-citation-management","task":"Use citation-management in an agent workflow","agent":"codex","outcome":"success","install_used":true,"risk_blocked":false,"setup_required":false,"task_success":true,"output_quality":4,"error_type":null,"human_review_required":false,"workspace":"sandbox","time_to_useful_ms":120000,"notes":"Report the smallest successful task, setup friction, files touched, and risk notes."}},"endpoints":{"web":"https://www.openagentskill.com/skills/k-dense-ai-citation-management","api":"https://www.openagentskill.com/api/agent/skills/k-dense-ai-citation-management","audit":"https://www.openagentskill.com/skills/k-dense-ai-citation-management/audit","eval":"https://www.openagentskill.com/api/agent/evals?slug=k-dense-ai-citation-management&task=Use%20citation-management%20in%20an%20agent%20workflow&max_risk=medium","resolve":"https://www.openagentskill.com/api/agent/resolve?task=Use%20citation-management%20in%20an%20agent%20workflow&agent=codex&max_risk=medium","receipt":"https://www.openagentskill.com/api/agent/receipt?task=Use%20citation-management%20in%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text","install":"https://www.openagentskill.com/api/skills/k-dense-ai-citation-management/install","manifest":"https://www.openagentskill.com/api/registry/manifest/k-dense-ai-citation-management"}},"machine_metadata":{"version":"openagentskill-agent-metadata-v2","skill":{"slug":"k-dense-ai-citation-management","name":"citation-management","description":"Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.","category":"research","url":"https://www.openagentskill.com/skills/k-dense-ai-citation-management","repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management","github_repo":"K-Dense-AI/scientific-agent-skills"},"suited_tasks":["Workflow automation workflows","Claude Code teams","teams that value GitHub adoption signals","Move data between tools","Transform files","Trigger repeatable actions","Search sources","Extract claims"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI","CLI"],"install":{"command":"npx skills add K-Dense-AI/scientific-agent-skills --skill citation-management","ready":true,"targets":[{"id":"openagentskill-cli","label":"CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.3.0/openagentskill-0.3.0.tgz add k-dense-ai-citation-management"},{"id":"codex","label":"Codex","kind":"agent-prompt","value":"Install the \"citation-management\" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"claude-code","label":"Claude Code","kind":"agent-prompt","value":"Add \"citation-management\" as a Claude Code skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"cursor","label":"Cursor","kind":"agent-prompt","value":"Turn \"citation-management\" from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."}],"handoff_url":"https://www.openagentskill.com/api/skills/k-dense-ai-citation-management/install","manifest_url":"https://www.openagentskill.com/api/registry/manifest/k-dense-ai-citation-management"},"trust":{"score":72,"label":"Strong shortlist","version":"trust-score-v4","install_policy":"human_review_before_install","evidence":{"stars":"41K GitHub stars","repoActivity":"41K stars, 3.8K forks","lastPushed":"7d since push","license":"MIT License","repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management","install":"npx skills add K-Dense-AI/scientific-agent-skills --skill citation-management","installSafety":"standard package or runtime install path","permissionSurface":"secrets or environment access, shell or command execution","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet"},"outcome_evidence":{"total":0,"successes":0,"failures":0,"not_relevant":0,"success_rate":null,"recent_success_rate":null,"recent_failure_rate":null,"install_attempts":0,"install_success_rate":null,"risk_blocked":0,"setup_required":0,"avg_output_quality":null,"production_outcomes":0,"last_outcome_at":null,"label":"No agent outcome data yet"},"auto_install":{"allowed":false,"sandbox_required":true,"reason":"Human review or sandbox validation is required before automatic installation."},"best_for":["research","agent-skill"],"known_risks":["Google Scholar scraping via 'scholarly' may violate Google's Terms of Service and is unreliable; consider recommending it only as a last resort or with explicit user consent.","Financial research output is not financial advice; require human review before any live investment decision.","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access","Permission surface: secrets or environment access, shell or command execution"]},"agent_proven":{"version":"agent-proven-v1","score":0,"tier":"unproven","label":"Needs first agent run","summary":"No agent outcome reports yet. Use Resolve, run one narrow sandbox task, then report the result.","metrics":{"totalOutcomes":0,"successfulOutcomes":0,"failedOutcomes":0,"installAttempts":0,"installSuccessRate":null,"successRate":null,"recentSuccessRate":null,"recentFailureRate":null,"riskBlocked":0,"setupRequired":0,"notRelevant":0,"avgOutputQuality":null,"avgTimeToUsefulMs":null,"productionOutcomes":0,"humanReviewRequired":0,"uniqueAgents":0,"lastOutcomeAt":null},"signals":[],"penalties":["No real agent outcome evidence yet"]},"audit":{"score":83,"risk_level":"needs_review","risk_label":"Needs review","warnings":["Dependency or permission surface needs review","Permission surface may require sandboxing","Financial research output is not financial advice; require human review before any live investment decision","Google Scholar scraping via 'scholarly' may violate Google's Terms of Service and is unreliable; consider recommending it only as a last resort or with explicit user consent.","The skill relies on multiple external APIs; network failures or rate limits could interrupt workflows, but the documentation acknowledges this and provides fallbacks.","Financial research output is not financial advice; require human review before any live investment decision.","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access"]},"safety_gate":{"tier":"experimental","label":"Experimental","auto_install_policy":"review","auto_install_allowed":false,"human_review_required":true,"blocked":false,"recommended_action":"Test manually in an isolated workspace and compare against safer alternatives."},"quality":{"score":93,"label":"Excellent"},"supply":{"track":"Research and knowledge work","scenario":"Research agents","maintenance":"7d since push","risk":"Needs review"},"alternative_skills":[],"do_not_use_when":["teams that need a vendor-supported SLA","production agents without a repository review","Google Scholar scraping via 'scholarly' may violate Google's Terms of Service and is unreliable; consider recommending it only as a last resort or with explicit user consent.","High-risk permission hints: Shell or command execution, Secrets or environment access","Dependency or permission surface needs review","Permission surface may require sandboxing","Financial research output is not financial advice; require human review before any live investment decision","The skill relies on multiple external APIs; network failures or rate limits could interrupt workflows, but the documentation acknowledges this and provides fallbacks."],"agent_contract":{"task_input":"Use citation-management in an agent workflow","recommended_action":"Test manually in an isolated workspace and compare against safer alternatives.","install_policy":"review","minimum_review_before_use":["Trust: 72/100 Strong shortlist","Audit: 83/100 Needs review","Safety: 39/100 Avoid automatic install","Review repository, license, install command, and permission surface before production use."],"expected_agent_output":{"selected_skill":"k-dense-ai-citation-management (citation-management)","install_command":"npx skills add K-Dense-AI/scientific-agent-skills --skill citation-management","risk_summary":"Needs review; Experimental; Review before production","verification_result":"Report the smallest successful task, files touched, warnings, and any missing setup."}},"outcome_feedback":{"endpoint":"https://www.openagentskill.com/api/agent/outcome","method":"POST","requires_resolve_event_id":true,"event_id_source":"Use install_receipt.outcome_feedback.event_id or feedback.event_id returned by /api/agent/resolve for the current task.","expected_outcomes":["success","failed","not_relevant","blocked_by_risk","setup_required"],"payload_template":{"event_id":"<install_receipt.outcome_feedback.event_id or feedback.event_id from /api/agent/resolve>","skill_slug":"k-dense-ai-citation-management","task":"Use citation-management in an agent workflow","agent":"codex","outcome":"success","install_used":true,"risk_blocked":false,"setup_required":false,"task_success":true,"output_quality":4,"error_type":null,"human_review_required":false,"workspace":"sandbox","time_to_useful_ms":120000,"notes":"Report the smallest successful task, setup friction, files touched, and risk notes."}},"endpoints":{"web":"https://www.openagentskill.com/skills/k-dense-ai-citation-management","api":"https://www.openagentskill.com/api/agent/skills/k-dense-ai-citation-management","audit":"https://www.openagentskill.com/skills/k-dense-ai-citation-management/audit","eval":"https://www.openagentskill.com/api/agent/evals?slug=k-dense-ai-citation-management&task=Use%20citation-management%20in%20an%20agent%20workflow&max_risk=medium","resolve":"https://www.openagentskill.com/api/agent/resolve?task=Use%20citation-management%20in%20an%20agent%20workflow&agent=codex&max_risk=medium","receipt":"https://www.openagentskill.com/api/agent/receipt?task=Use%20citation-management%20in%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text","install":"https://www.openagentskill.com/api/skills/k-dense-ai-citation-management/install","manifest":"https://www.openagentskill.com/api/registry/manifest/k-dense-ai-citation-management"}},"supply_profile":{"track":{"slug":"research","label":"Research and knowledge work","shortLabel":"Research","description":"Deep research, source comparison, literature review, RAG, knowledge search, and reports."},"scenario":{"label":"Research agents","description":"I need my agent to research a topic, compare sources, and produce a concise report.","useCases":[{"slug":"workflow-automation","title":"Workflow automation"},{"slug":"research-agents","title":"Research agents"},{"slug":"document-processing","title":"Document processing"}]},"applicableAgents":["Claude Code","CLI","Codex","Cursor"],"install":{"ready":true,"command":"npx skills add K-Dense-AI/scientific-agent-skills --skill citation-management","primaryTarget":"CLI","targetCount":4},"githubQuality":{"stars":41344,"starsLabel":"41K","forks":3811,"license":"MIT License","qualityScore":93,"trustScore":72,"auditScore":83},"maintenance":{"status":"fresh","label":"7d since push","daysSincePush":7,"lastPushedAt":"2026-08-31T17:14:03+00:00"},"risk":{"level":"needs_review","label":"Needs review","requiresReview":true,"notes":["Dependency or permission surface needs review","Permission surface may require sandboxing","Financial research output is not financial advice; require human review before any live investment decision","Google Scholar scraping via 'scholarly' may violate Google's Terms of Service and is unreliable; consider recommending it only as a last resort or with explicit user consent.","The skill relies on multiple external APIs; network failures or rate limits could interrupt workflows, but the documentation acknowledges this and provides fallbacks."]},"coverageTags":["Research","Research agents","agent-skill"]},"audit":{"audit_score":83,"risk_level":"needs_review","risk_label":"Needs review","quality_score":93,"trust_score":72,"maintenance_score":100,"security_score":70,"install_score":92,"warnings":["Dependency or permission surface needs review","Permission surface may require sandboxing","Financial research output is not financial advice; require human review before any live investment decision","Google Scholar scraping via 'scholarly' may violate Google's Terms of Service and is unreliable; consider recommending it only as a last resort or with explicit user consent.","The skill relies on multiple external APIs; network failures or rate limits could interrupt workflows, but the documentation acknowledges this and provides fallbacks.","Financial research output is not financial advice; require human review before any live investment decision.","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access","Permission surface: secrets or environment access, shell or command execution"]},"quality_signals":{"model":"v2","star_score":32.31,"usage_score":0,"review_score":5.4,"metadata_score":3,"freshness_score":15},"platforms":["Claude Code"],"use_cases":[{"slug":"workflow-automation","title":"Workflow automation","url":"https://www.openagentskill.com/use-cases/workflow-automation"},{"slug":"research-agents","title":"Research agents","url":"https://www.openagentskill.com/use-cases/research-agents"},{"slug":"document-processing","title":"Document processing","url":"https://www.openagentskill.com/use-cases/document-processing"},{"slug":"rag-knowledge","title":"RAG and knowledge","url":"https://www.openagentskill.com/use-cases/rag-knowledge"}],"stacks":[{"slug":"content-growth-agent","title":"Content growth agent","url":"https://www.openagentskill.com/collections/content-growth-agent"},{"slug":"research-report-agent","title":"Research report agent","url":"https://www.openagentskill.com/collections/research-report-agent"},{"slug":"web-data-pipeline","title":"Web data pipeline","url":"https://www.openagentskill.com/collections/web-data-pipeline"}],"install":"npx skills add K-Dense-AI/scientific-agent-skills --skill citation-management","install_targets":[{"id":"openagentskill-cli","label":"CLI","title":"OpenAgentSkill CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.3.0/openagentskill-0.3.0.tgz add k-dense-ai-citation-management","description":"Resolve policy, run the source installer safely, and report a verified install receipt.","copyLabel":"Copy command"},{"id":"codex","label":"Codex","title":"Codex install prompt","kind":"agent-prompt","value":"Install the \"citation-management\" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes.","description":"Give Codex a repo-aware install prompt when the skill is not available through a local CLI.","copyLabel":"Copy prompt"},{"id":"claude-code","label":"Claude Code","title":"Claude Code skill prompt","kind":"agent-prompt","value":"Add \"citation-management\" as a Claude Code skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes.","description":"Use this prompt to ask Claude Code to add the skill and explain the local activation steps.","copyLabel":"Copy prompt"},{"id":"cursor","label":"Cursor","title":"Cursor rule prompt","kind":"agent-prompt","value":"Turn \"citation-management\" from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-citation-management\",\"task\":\"Install citation-management\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes.","description":"Use this when installing as Cursor project rules or reusable agent instructions.","copyLabel":"Copy prompt"}],"repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management","github_repo":"K-Dense-AI/scientific-agent-skills","version":"1.0.0","license":"MIT License","urls":{"web":"https://www.openagentskill.com/skills/k-dense-ai-citation-management","repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/citation-management","api":"/api/agent/skills/k-dense-ai-citation-management","install_api":"/api/skills/k-dense-ai-citation-management/install"},"meta":{"created_at":"2026-09-01T15:32:04.776919+00:00","updated_at":"2026-09-01T15:32:04.896856+00:00","agent_friendly":true}}