{"eval":{"version":"openagentskill-skill-eval-v1","slug":"k-dense-ai-anndata","name":"anndata","generated_at":"2026-08-23T01:24:00.474Z","task_input":"Evaluate anndata before installing it in an AI agent workflow","status":"failed","score":81,"risk_level":"high","decision":{"recommendation":"do_not_auto_install","reason":"Permission surface: shell or command execution, filesystem or document access","auto_install_allowed":false,"policy":"block","human_review_required":true},"task_fit":{"score":84,"suited_tasks":["GitHub automation workflows","Claude Code teams","teams that value GitHub adoption signals","Inspect repository metadata","Compare code changes","Write concise engineering summaries","Move data between tools","Transform files"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI","CLI"]},"install":{"command":"npx skills add K-Dense-AI/scientific-agent-skills --skill anndata","ready":true,"policy":"review","safety_label":"Review before install","targets":[{"id":"openagentskill-cli","label":"CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.2.1/openagentskill-0.2.1.tgz install k-dense-ai-anndata"},{"id":"codex","label":"Codex","kind":"agent-prompt","value":"Install the \"anndata\" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-anndata\",\"task\":\"Install anndata\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"claude-code","label":"Claude Code","kind":"agent-prompt","value":"Add \"anndata\" as a Claude Code skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-anndata\",\"task\":\"Install anndata\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"cursor","label":"Cursor","kind":"agent-prompt","value":"Turn \"anndata\" from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-anndata\",\"task\":\"Install anndata\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."}]},"trust":{"score":82,"label":"Strong shortlist","version":"trust-score-v4","evidence":{"stars":"34K GitHub stars","repoActivity":"34K stars, 3.3K forks","lastPushed":"2d since push","license":"BSD-3-Clause license","repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata","install":"npx skills add K-Dense-AI/scientific-agent-skills --skill anndata","installSafety":"standard package or runtime install path","permissionSurface":"shell or command execution, filesystem or document access","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet"}},"audit":{"score":88,"risk_level":"needs_review","risk_label":"Needs review","warnings":["Dependency or permission surface needs review","Permission surface may require sandboxing","Permission surface needs review: shell or command execution, filesystem or document access","Dependency/runtime risk: command execution surface, external package install surface","Permission surface: shell or command execution, filesystem or document access"]},"safety_gate":{"score":60,"tier":"reviewed","label":"Reviewed with permission notes","auto_install_policy":"review","blocked":false,"permission_hints":[{"id":"shell","label":"Shell or command execution","reason":"Skill metadata references terminal, CLI, shell, subprocess, or command execution workflows.","severity":"high"},{"id":"network","label":"Network access","reason":"Skill likely fetches remote pages, APIs, repositories, or external services.","severity":"medium"},{"id":"filesystem","label":"Filesystem access","reason":"Skill may read or write project files, documents, generated artifacts, or local workspace state.","severity":"medium"}],"policy_warnings":["High-risk permission hints: Shell or command execution","Dependency or permission surface needs review"]},"checks":[{"id":"task_fit","label":"Task fit","status":"pass","score":84,"required_for_auto_install":true,"detail":"Task wording matches this skill metadata.","evidence":["Evaluate anndata before installing it in an AI agent workflow","data-analysis","GitHub automation workflows; Claude Code teams; teams that value GitHub adoption signals"]},{"id":"install_path","label":"Install path","status":"pass","score":92,"required_for_auto_install":true,"detail":"Install handoff is available.","evidence":["npx skills add K-Dense-AI/scientific-agent-skills --skill anndata"]},{"id":"install_safety","label":"Install command safety","status":"pass","score":92,"required_for_auto_install":true,"detail":"standard package or runtime install path","evidence":["npx skills add K-Dense-AI/scientific-agent-skills --skill anndata"]},{"id":"trust_score","label":"Trust score","status":"pass","score":82,"required_for_auto_install":true,"detail":"Good trust signals with a few areas worth checking before rollout.","evidence":["Strong shortlist","34K GitHub stars","BSD-3-Clause license"]},{"id":"audit_score","label":"Audit score","status":"warn","score":88,"required_for_auto_install":true,"detail":"Needs review","evidence":["Dependency or permission surface needs review"]},{"id":"agent_safety_gate","label":"Agent safety gate","status":"warn","score":60,"required_for_auto_install":true,"detail":"Usable candidate, but the agent should surface permission and audit notes before installation.","evidence":["Require human approval before installing into a real workspace.","High-risk permission hints: Shell or command execution"]},{"id":"readme_skillmd_completeness","label":"README/SKILL.md completeness","status":"pass","score":86,"required_for_auto_install":false,"detail":"Metadata includes enough usage and workflow context","evidence":["Strong README/SKILL.md context"]},{"id":"license_clarity","label":"License clarity","status":"pass","score":86,"required_for_auto_install":true,"detail":"BSD-3-Clause license","evidence":["BSD-3-Clause license"]},{"id":"recent_maintenance","label":"Recent maintenance","status":"pass","score":100,"required_for_auto_install":false,"detail":"2d since push","evidence":["2d since push"]},{"id":"permission_surface","label":"Permission surface","status":"fail","score":48,"required_for_auto_install":true,"detail":"shell or command execution, filesystem or document access","evidence":["Shell or command execution: high","Network access: medium","Filesystem access: medium"]},{"id":"alternatives","label":"Alternatives available","status":"pass","score":82,"required_for_auto_install":false,"detail":"Alternative skills are available for comparison.","evidence":["d3-d3","apache-echarts","microsoft-data-science-for-beginners","sequelize-sequelize"]}],"blockers":["Permission surface: shell or command execution, filesystem or document access"],"warnings":["Audit score: Needs review","Agent safety gate: Usable candidate, but the agent should surface permission and audit notes before installation.","High-risk permission hints: Shell or command execution","Dependency or permission surface needs review","Permission surface may require sandboxing","Permission surface needs review: shell or command execution, filesystem or document access","Dependency/runtime risk: command execution surface, external package install surface","Permission surface: shell or command execution, filesystem or document access"],"validation_plan":["Inspect repository, README/SKILL.md, license, and recent commits before production use.","Install in an isolated workspace or sandbox with no production secrets available.","Run the smallest representative task and record files touched, commands run, network access, and outputs.","Compare the selected skill against at least one alternative when the eval status is review or failed.","Promote only after the agent reports a successful verification result and unresolved warnings are accepted."],"do_not_use_when":["teams that need a vendor-supported SLA","high-compliance environments without internal security review","No major risk signals from current metadata","High-risk permission hints: Shell or command execution","Dependency or permission surface needs review","Permission surface may require sandboxing","Permission surface needs review: shell or command execution, filesystem or document access","Dependency/runtime risk: command execution surface, external package install surface"],"alternatives":[{"slug":"d3-d3","name":"D3","url":"https://www.openagentskill.com/skills/d3-d3","stars":113096,"install_command":"npx skills add d3/d3","trust_score":89,"audit_score":91},{"slug":"apache-echarts","name":"Echarts","url":"https://www.openagentskill.com/skills/apache-echarts","stars":66600,"install_command":"npx skills add apache/echarts","trust_score":91,"audit_score":92},{"slug":"microsoft-data-science-for-beginners","name":"Data Science For Beginners","url":"https://www.openagentskill.com/skills/microsoft-data-science-for-beginners","stars":35626,"install_command":"npx skills add microsoft/Data-Science-For-Beginners","trust_score":90,"audit_score":92},{"slug":"sequelize-sequelize","name":"Sequelize","url":"https://www.openagentskill.com/skills/sequelize-sequelize","stars":30352,"install_command":"npx skills add sequelize/sequelize","trust_score":90,"audit_score":92}],"machine_metadata":{"version":"openagentskill-agent-metadata-v2","skill":{"slug":"k-dense-ai-anndata","name":"anndata","description":"Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.","category":"data-analysis","url":"https://www.openagentskill.com/skills/k-dense-ai-anndata","repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata","github_repo":"K-Dense-AI/scientific-agent-skills"},"suited_tasks":["GitHub automation workflows","Claude Code teams","teams that value GitHub adoption signals","Inspect repository metadata","Compare code changes","Write concise engineering summaries","Move data between tools","Transform files"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI","CLI"],"install":{"command":"npx skills add K-Dense-AI/scientific-agent-skills --skill anndata","ready":true,"targets":[{"id":"openagentskill-cli","label":"CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.2.1/openagentskill-0.2.1.tgz install k-dense-ai-anndata"},{"id":"codex","label":"Codex","kind":"agent-prompt","value":"Install the \"anndata\" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-anndata\",\"task\":\"Install anndata\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"claude-code","label":"Claude Code","kind":"agent-prompt","value":"Add \"anndata\" as a Claude Code skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-anndata\",\"task\":\"Install anndata\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"cursor","label":"Cursor","kind":"agent-prompt","value":"Turn \"anndata\" from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"k-dense-ai-anndata\",\"task\":\"Install anndata\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."}],"handoff_url":"https://www.openagentskill.com/api/skills/k-dense-ai-anndata/install","manifest_url":"https://www.openagentskill.com/api/registry/manifest/k-dense-ai-anndata"},"trust":{"score":82,"label":"Strong shortlist","version":"trust-score-v4","install_policy":"human_review_before_install","evidence":{"stars":"34K GitHub stars","repoActivity":"34K stars, 3.3K forks","lastPushed":"2d since push","license":"BSD-3-Clause license","repository":"https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/anndata","install":"npx skills add K-Dense-AI/scientific-agent-skills --skill anndata","installSafety":"standard package or runtime install path","permissionSurface":"shell or command execution, filesystem or document access","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet"},"outcome_evidence":{"total":0,"successes":0,"failures":0,"not_relevant":0,"success_rate":null,"recent_success_rate":null,"recent_failure_rate":null,"install_attempts":0,"install_success_rate":null,"risk_blocked":0,"setup_required":0,"avg_output_quality":null,"production_outcomes":0,"last_outcome_at":null,"label":"No agent outcome data yet"},"auto_install":{"allowed":false,"sandbox_required":true,"reason":"Human review or sandbox validation is required before automatic installation."},"best_for":["data-analysis","agent-skill"],"known_risks":["Permission surface needs review: shell or command execution, filesystem or document access","Dependency/runtime risk: command execution surface, external package install surface","Permission surface: shell or command execution, filesystem or document access"]},"agent_proven":{"version":"agent-proven-v1","score":0,"tier":"unproven","label":"Needs first agent run","summary":"No agent outcome reports yet. Use Resolve, run one narrow sandbox task, then report the result.","metrics":{"totalOutcomes":0,"successfulOutcomes":0,"failedOutcomes":0,"installAttempts":0,"installSuccessRate":null,"successRate":null,"recentSuccessRate":null,"recentFailureRate":null,"riskBlocked":0,"setupRequired":0,"notRelevant":0,"avgOutputQuality":null,"avgTimeToUsefulMs":null,"productionOutcomes":0,"humanReviewRequired":0,"uniqueAgents":0,"lastOutcomeAt":null},"signals":[],"penalties":["No real agent outcome evidence yet"]},"audit":{"score":88,"risk_level":"needs_review","risk_label":"Needs review","warnings":["Dependency or permission surface needs review","Permission surface may require sandboxing","Permission surface needs review: shell or command execution, filesystem or document access","Dependency/runtime risk: command execution surface, external package install surface","Permission surface: shell or command execution, filesystem or document access"]},"safety_gate":{"tier":"reviewed","label":"Reviewed with permission notes","auto_install_policy":"review","auto_install_allowed":false,"human_review_required":true,"blocked":false,"recommended_action":"Require human approval before installing into a real workspace."},"quality":{"score":92,"label":"Excellent"},"supply":{"track":"Data, BI, and analytics","scenario":"Data analysis","maintenance":"2d since push","risk":"Needs review"},"alternative_skills":[{"slug":"d3-d3","name":"D3","url":"https://www.openagentskill.com/skills/d3-d3","stars":113096,"install_command":"npx skills add d3/d3","trust_score":89,"audit_score":91},{"slug":"apache-echarts","name":"Echarts","url":"https://www.openagentskill.com/skills/apache-echarts","stars":66600,"install_command":"npx skills add apache/echarts","trust_score":91,"audit_score":92},{"slug":"microsoft-data-science-for-beginners","name":"Data Science For Beginners","url":"https://www.openagentskill.com/skills/microsoft-data-science-for-beginners","stars":35626,"install_command":"npx skills add microsoft/Data-Science-For-Beginners","trust_score":90,"audit_score":92},{"slug":"sequelize-sequelize","name":"Sequelize","url":"https://www.openagentskill.com/skills/sequelize-sequelize","stars":30352,"install_command":"npx skills add sequelize/sequelize","trust_score":90,"audit_score":92}],"do_not_use_when":["teams that need a vendor-supported SLA","high-compliance environments without internal security review","No major risk signals from current metadata","High-risk permission hints: Shell or command execution","Dependency or permission surface needs review","Permission surface may require sandboxing","Permission surface needs review: shell or command execution, filesystem or document access","Dependency/runtime risk: command execution surface, external package install surface"],"agent_contract":{"task_input":"Evaluate anndata before installing it in an AI agent workflow","recommended_action":"Require human approval before installing into a real workspace.","install_policy":"review","minimum_review_before_use":["Trust: 82/100 Strong shortlist","Audit: 88/100 Needs review","Safety: 60/100 Review before install","Review repository, license, install command, and permission surface before production use."],"expected_agent_output":{"selected_skill":"k-dense-ai-anndata (anndata)","install_command":"npx skills add K-Dense-AI/scientific-agent-skills --skill anndata","risk_summary":"Needs review; Reviewed with permission notes; Review before production","verification_result":"Report the smallest successful task, files touched, warnings, and any missing setup."}},"outcome_feedback":{"endpoint":"https://www.openagentskill.com/api/agent/outcome","method":"POST","requires_resolve_event_id":true,"event_id_source":"Use install_receipt.outcome_feedback.event_id or feedback.event_id returned by /api/agent/resolve for the current task.","expected_outcomes":["success","failed","not_relevant","blocked_by_risk","setup_required"],"payload_template":{"event_id":"<install_receipt.outcome_feedback.event_id or feedback.event_id from /api/agent/resolve>","skill_slug":"k-dense-ai-anndata","task":"Evaluate anndata before installing it in an AI agent workflow","agent":"codex","outcome":"success","install_used":true,"risk_blocked":false,"setup_required":false,"task_success":true,"output_quality":4,"error_type":null,"human_review_required":false,"workspace":"sandbox","time_to_useful_ms":120000,"notes":"Report the smallest successful task, setup friction, files touched, and risk notes."}},"endpoints":{"web":"https://www.openagentskill.com/skills/k-dense-ai-anndata","api":"https://www.openagentskill.com/api/agent/skills/k-dense-ai-anndata","audit":"https://www.openagentskill.com/skills/k-dense-ai-anndata/audit","eval":"https://www.openagentskill.com/api/agent/evals?slug=k-dense-ai-anndata&task=Evaluate%20anndata%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&max_risk=medium","resolve":"https://www.openagentskill.com/api/agent/resolve?task=Evaluate%20anndata%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&agent=codex&max_risk=medium","receipt":"https://www.openagentskill.com/api/agent/receipt?task=Evaluate%20anndata%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&agent=codex&max_risk=medium&format=text","install":"https://www.openagentskill.com/api/skills/k-dense-ai-anndata/install","manifest":"https://www.openagentskill.com/api/registry/manifest/k-dense-ai-anndata"}},"endpoints":{"web":"https://www.openagentskill.com/skills/k-dense-ai-anndata","api":"https://www.openagentskill.com/api/agent/skills/k-dense-ai-anndata","eval":"https://www.openagentskill.com/api/agent/evals?slug=k-dense-ai-anndata","audit":"https://www.openagentskill.com/skills/k-dense-ai-anndata/audit","resolve":"https://www.openagentskill.com/api/agent/resolve?task=Evaluate%20anndata%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&agent=codex&max_risk=medium"}},"meta":{"endpoint":"/api/agent/evals","mode":"skill_eval","purpose":"Pre-install eval contract for a single skill. Agents should read this before installing a reusable skill.","generated_at":"2026-08-23T01:24:00.475Z"}}