{"eval":{"version":"openagentskill-skill-eval-v1","slug":"clawbio-analyze-fasta","name":"analyze-fasta","generated_at":"2026-08-23T22:01:06.416Z","task_input":"Evaluate analyze-fasta before installing it in an AI agent workflow","status":"failed","score":70,"risk_level":"high","decision":{"recommendation":"do_not_auto_install","reason":"Agent safety gate: This skill should not be selected by an agent without explicit human security review.","auto_install_allowed":false,"policy":"block","human_review_required":true},"task_fit":{"score":94,"suited_tasks":["Research agents workflows","Claude Code teams","teams that value GitHub adoption signals","Search sources","Extract claims","Synthesize findings","Move data between tools","Transform files"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI","CLI"]},"install":{"command":"npx skills add ClawBio/ClawBio --skill analyze-fasta","ready":true,"policy":"block","safety_label":"Avoid automatic install","targets":[{"id":"openagentskill-cli","label":"CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.2.1/openagentskill-0.2.1.tgz install clawbio-analyze-fasta"},{"id":"codex","label":"Codex","kind":"agent-prompt","value":"Install the \"analyze-fasta\" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-analyze-fasta\",\"task\":\"Install analyze-fasta\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"claude-code","label":"Claude Code","kind":"agent-prompt","value":"Add \"analyze-fasta\" as a Claude Code skill from https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-analyze-fasta\",\"task\":\"Install analyze-fasta\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"cursor","label":"Cursor","kind":"agent-prompt","value":"Turn \"analyze-fasta\" from https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-analyze-fasta\",\"task\":\"Install analyze-fasta\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."}]},"trust":{"score":69,"label":"Manual review","version":"trust-score-v4","evidence":{"stars":"1.1K GitHub stars","repoActivity":"1.1K stars, 257 forks","lastPushed":"Pushed today","license":"MIT","repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta","install":"npx skills add ClawBio/ClawBio --skill analyze-fasta","installSafety":"standard package or runtime install path","permissionSurface":"secrets or environment access, shell or command execution","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet"}},"audit":{"score":79,"risk_level":"needs_review","risk_label":"Needs review","warnings":["Dependency or permission surface needs review","Permission surface may require sandboxing","The SKILL.md excerpt is truncated; full documentation may be incomplete, but the provided sections are clear.","The script uses Spanish comments and variable names, which may reduce maintainability for international contributors.","The CLI flags (--json, --html) are not fully aligned with the documented outputs (report.md, result.json, report_html, reproducibility); ensure the script generates all documented artifacts.","Quality score needs review","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access"]},"safety_gate":{"score":39,"tier":"blocked","label":"Blocked for auto-install","auto_install_policy":"block","blocked":true,"permission_hints":[{"id":"shell","label":"Shell or command execution","reason":"Skill metadata references terminal, CLI, shell, subprocess, or command execution workflows.","severity":"high"},{"id":"network","label":"Network access","reason":"Skill likely fetches remote pages, APIs, repositories, or external services.","severity":"medium"},{"id":"filesystem","label":"Filesystem access","reason":"Skill may read or write project files, documents, generated artifacts, or local workspace state.","severity":"medium"},{"id":"secrets","label":"Secrets or environment access","reason":"Skill metadata references credentials, tokens, environment variables, or secret-bearing workflows.","severity":"high"}],"policy_warnings":["High-risk permission hints: Shell or command execution, Secrets or environment access","Dependency or permission surface needs review"]},"checks":[{"id":"task_fit","label":"Task fit","status":"pass","score":94,"required_for_auto_install":true,"detail":"Task wording matches this skill metadata.","evidence":["Evaluate analyze-fasta before installing it in an AI agent workflow","productivity","Research agents workflows; Claude Code teams; teams that value GitHub adoption signals"]},{"id":"install_path","label":"Install path","status":"pass","score":92,"required_for_auto_install":true,"detail":"Install handoff is available.","evidence":["npx skills add ClawBio/ClawBio --skill analyze-fasta"]},{"id":"install_safety","label":"Install command safety","status":"pass","score":92,"required_for_auto_install":true,"detail":"standard package or runtime install path","evidence":["npx skills add ClawBio/ClawBio --skill analyze-fasta"]},{"id":"trust_score","label":"Trust score","status":"warn","score":69,"required_for_auto_install":true,"detail":"Potentially useful, but at least one trust signal needs human inspection.","evidence":["Manual review","1.1K GitHub stars","MIT"]},{"id":"audit_score","label":"Audit score","status":"warn","score":79,"required_for_auto_install":true,"detail":"Needs review","evidence":["Dependency or permission surface needs review"]},{"id":"agent_safety_gate","label":"Agent safety gate","status":"fail","score":39,"required_for_auto_install":true,"detail":"This skill should not be selected by an agent without explicit human security review.","evidence":["Do not auto-install. Inspect the source, dependencies, and permission surface first.","Metadata combines secrets access with shell or command execution"]},{"id":"readme_skillmd_completeness","label":"README/SKILL.md completeness","status":"pass","score":86,"required_for_auto_install":false,"detail":"Metadata includes enough usage and workflow context","evidence":["Strong README/SKILL.md context"]},{"id":"license_clarity","label":"License clarity","status":"pass","score":86,"required_for_auto_install":true,"detail":"MIT","evidence":["MIT"]},{"id":"recent_maintenance","label":"Recent maintenance","status":"pass","score":100,"required_for_auto_install":false,"detail":"Pushed today","evidence":["Pushed today"]},{"id":"permission_surface","label":"Permission surface","status":"fail","score":22,"required_for_auto_install":true,"detail":"secrets or environment access, shell or command execution","evidence":["Shell or command execution: high","Network access: medium","Filesystem access: medium"]},{"id":"alternatives","label":"Alternatives available","status":"pass","score":82,"required_for_auto_install":false,"detail":"Alternative skills are available for comparison.","evidence":["larksuite-cli","aaron-he-zhu-aaron-marketing-skills","chuspeeism-dashiai-ppt-skill","917dhj-deeppapernote"]}],"blockers":["Agent safety gate: This skill should not be selected by an agent without explicit human security review.","Permission surface: secrets or environment access, shell or command execution"],"warnings":["Trust score: Potentially useful, but at least one trust signal needs human inspection.","Audit score: Needs review","High-risk permission hints: Shell or command execution, Secrets or environment access","Dependency or permission surface needs review","Permission surface may require sandboxing","The SKILL.md excerpt is truncated; full documentation may be incomplete, but the provided sections are clear.","The script uses Spanish comments and variable names, which may reduce maintainability for international contributors.","The CLI flags (--json, --html) are not fully aligned with the documented outputs (report.md, result.json, report_html, reproducibility); ensure the script generates all documented artifacts.","Quality score needs review","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access","Permission surface: secrets or environment access, shell or command execution"],"validation_plan":["Inspect repository, README/SKILL.md, license, and recent commits before production use.","Install in an isolated workspace or sandbox with no production secrets available.","Run the smallest representative task and record files touched, commands run, network access, and outputs.","Compare the selected skill against at least one alternative when the eval status is review or failed.","Promote only after the agent reports a successful verification result and unresolved warnings are accepted."],"do_not_use_when":["teams that need a vendor-supported SLA","production agents without a repository review","The SKILL.md excerpt is truncated; full documentation may be incomplete, but the provided sections are clear.","High-risk permission hints: Shell or command execution, Secrets or environment access","Dependency or permission surface needs review","Permission surface may require sandboxing","The script uses Spanish comments and variable names, which may reduce maintainability for international contributors.","The CLI flags (--json, --html) are not fully aligned with the documented outputs (report.md, result.json, report_html, reproducibility); ensure the script generates all documented artifacts."],"alternatives":[{"slug":"larksuite-cli","name":"Cli","url":"https://www.openagentskill.com/skills/larksuite-cli","stars":16552,"install_command":"npx skills add larksuite/cli","trust_score":86,"audit_score":91},{"slug":"aaron-he-zhu-aaron-marketing-skills","name":"Aaron Marketing Skills","url":"https://www.openagentskill.com/skills/aaron-he-zhu-aaron-marketing-skills","stars":2578,"install_command":"npx skills add aaron-he-zhu/aaron-marketing-skills","trust_score":89,"audit_score":93},{"slug":"chuspeeism-dashiai-ppt-skill","name":"DashiAI Ppt Skill","url":"https://www.openagentskill.com/skills/chuspeeism-dashiai-ppt-skill","stars":3794,"install_command":"npx skills add chuspeeism/dashiAI-ppt-skill","trust_score":92,"audit_score":93},{"slug":"917dhj-deeppapernote","name":"DeepPaperNote","url":"https://www.openagentskill.com/skills/917dhj-deeppapernote","stars":621,"install_command":"npx skills add 917Dhj/DeepPaperNote","trust_score":87,"audit_score":93}],"machine_metadata":{"version":"openagentskill-agent-metadata-v2","skill":{"slug":"clawbio-analyze-fasta","name":"analyze-fasta","description":"Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.","category":"productivity","url":"https://www.openagentskill.com/skills/clawbio-analyze-fasta","repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta","github_repo":"ClawBio/ClawBio"},"suited_tasks":["Research agents workflows","Claude Code teams","teams that value GitHub adoption signals","Search sources","Extract claims","Synthesize findings","Move data between tools","Transform files"],"suited_agents":["Codex","Claude Code","Cursor","OpenAgentSkill CLI","CLI"],"install":{"command":"npx skills add ClawBio/ClawBio --skill analyze-fasta","ready":true,"targets":[{"id":"openagentskill-cli","label":"CLI","kind":"command","value":"npx --yes https://github.com/Leon-Drq/openagentskill/releases/download/cli-v0.2.1/openagentskill-0.2.1.tgz install clawbio-analyze-fasta"},{"id":"codex","label":"Codex","kind":"agent-prompt","value":"Install the \"analyze-fasta\" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta. Read its SKILL.md or equivalent instructions first, install only the files needed for this workspace, and summarize any required setup before using it. Skill purpose: Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-analyze-fasta\",\"task\":\"Install analyze-fasta\",\"agent\":\"codex\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"claude-code","label":"Claude Code","kind":"agent-prompt","value":"Add \"analyze-fasta\" as a Claude Code skill from https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta. Inspect the skill instructions, place the reusable skill files in the appropriate local skills location for this project, and report the activation steps. Skill purpose: Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-analyze-fasta\",\"task\":\"Install analyze-fasta\",\"agent\":\"claude-code\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."},{"id":"cursor","label":"Cursor","kind":"agent-prompt","value":"Turn \"analyze-fasta\" from https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta into a reusable Cursor project rule or agent instruction. Preserve the core workflow, adapt paths to this repo, and keep the rule scoped to tasks where it is relevant. Skill purpose: Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining. After the install attempt, report the result to https://www.openagentskill.com/api/agent/outcome with POST JSON {\"event_id\":\"install_<unique-id>\",\"skill_slug\":\"clawbio-analyze-fasta\",\"task\":\"Install analyze-fasta\",\"agent\":\"cursor\",\"outcome\":\"success\",\"install_used\":true}. Replace event_id with a unique value and outcome with success or failed. Report success only after the skill is installed and a minimal verification passes."}],"handoff_url":"https://www.openagentskill.com/api/skills/clawbio-analyze-fasta/install","manifest_url":"https://www.openagentskill.com/api/registry/manifest/clawbio-analyze-fasta"},"trust":{"score":69,"label":"Manual review","version":"trust-score-v4","install_policy":"human_review_before_install","evidence":{"stars":"1.1K GitHub stars","repoActivity":"1.1K stars, 257 forks","lastPushed":"Pushed today","license":"MIT","repository":"https://github.com/ClawBio/ClawBio/tree/main/skills/analyze-fasta","install":"npx skills add ClawBio/ClawBio --skill analyze-fasta","installSafety":"standard package or runtime install path","permissionSurface":"secrets or environment access, shell or command execution","documentation":"Strong README/SKILL.md context","agentOutcomes":"No agent outcome data yet"},"outcome_evidence":{"total":0,"successes":0,"failures":0,"not_relevant":0,"success_rate":null,"recent_success_rate":null,"recent_failure_rate":null,"install_attempts":0,"install_success_rate":null,"risk_blocked":0,"setup_required":0,"avg_output_quality":null,"production_outcomes":0,"last_outcome_at":null,"label":"No agent outcome data yet"},"auto_install":{"allowed":false,"sandbox_required":true,"reason":"Human review or sandbox validation is required before automatic installation."},"best_for":["productivity","agent-skill"],"known_risks":["The SKILL.md excerpt is truncated; full documentation may be incomplete, but the provided sections are clear.","Quality score needs review","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access","Permission surface: secrets or environment access, shell or command execution"]},"agent_proven":{"version":"agent-proven-v1","score":0,"tier":"unproven","label":"Needs first agent run","summary":"No agent outcome reports yet. Use Resolve, run one narrow sandbox task, then report the result.","metrics":{"totalOutcomes":0,"successfulOutcomes":0,"failedOutcomes":0,"installAttempts":0,"installSuccessRate":null,"successRate":null,"recentSuccessRate":null,"recentFailureRate":null,"riskBlocked":0,"setupRequired":0,"notRelevant":0,"avgOutputQuality":null,"avgTimeToUsefulMs":null,"productionOutcomes":0,"humanReviewRequired":0,"uniqueAgents":0,"lastOutcomeAt":null},"signals":[],"penalties":["No real agent outcome evidence yet"]},"audit":{"score":79,"risk_level":"needs_review","risk_label":"Needs review","warnings":["Dependency or permission surface needs review","Permission surface may require sandboxing","The SKILL.md excerpt is truncated; full documentation may be incomplete, but the provided sections are clear.","The script uses Spanish comments and variable names, which may reduce maintainability for international contributors.","The CLI flags (--json, --html) are not fully aligned with the documented outputs (report.md, result.json, report_html, reproducibility); ensure the script generates all documented artifacts.","Quality score needs review","Permission surface needs review: secrets or environment access, shell or command execution","Dependency/runtime risk: command execution surface, credential or environment access"]},"safety_gate":{"tier":"blocked","label":"Blocked for auto-install","auto_install_policy":"block","auto_install_allowed":false,"human_review_required":true,"blocked":true,"recommended_action":"Do not auto-install. Inspect the source, dependencies, and permission surface first."},"quality":{"score":78,"label":"Strong"},"supply":{"track":"Research and knowledge work","scenario":"Research agents","maintenance":"Pushed today","risk":"Needs review"},"alternative_skills":[{"slug":"larksuite-cli","name":"Cli","url":"https://www.openagentskill.com/skills/larksuite-cli","stars":16552,"install_command":"npx skills add larksuite/cli","trust_score":86,"audit_score":91},{"slug":"aaron-he-zhu-aaron-marketing-skills","name":"Aaron Marketing Skills","url":"https://www.openagentskill.com/skills/aaron-he-zhu-aaron-marketing-skills","stars":2578,"install_command":"npx skills add aaron-he-zhu/aaron-marketing-skills","trust_score":89,"audit_score":93},{"slug":"chuspeeism-dashiai-ppt-skill","name":"DashiAI Ppt Skill","url":"https://www.openagentskill.com/skills/chuspeeism-dashiai-ppt-skill","stars":3794,"install_command":"npx skills add chuspeeism/dashiAI-ppt-skill","trust_score":92,"audit_score":93},{"slug":"917dhj-deeppapernote","name":"DeepPaperNote","url":"https://www.openagentskill.com/skills/917dhj-deeppapernote","stars":621,"install_command":"npx skills add 917Dhj/DeepPaperNote","trust_score":87,"audit_score":93}],"do_not_use_when":["teams that need a vendor-supported SLA","production agents without a repository review","The SKILL.md excerpt is truncated; full documentation may be incomplete, but the provided sections are clear.","High-risk permission hints: Shell or command execution, Secrets or environment access","Dependency or permission surface needs review","Permission surface may require sandboxing","The script uses Spanish comments and variable names, which may reduce maintainability for international contributors.","The CLI flags (--json, --html) are not fully aligned with the documented outputs (report.md, result.json, report_html, reproducibility); ensure the script generates all documented artifacts."],"agent_contract":{"task_input":"Evaluate analyze-fasta before installing it in an AI agent workflow","recommended_action":"Do not auto-install. Inspect the source, dependencies, and permission surface first.","install_policy":"block","minimum_review_before_use":["Trust: 69/100 Manual review","Audit: 79/100 Needs review","Safety: 39/100 Avoid automatic install","Review repository, license, install command, and permission surface before production use."],"expected_agent_output":{"selected_skill":"clawbio-analyze-fasta (analyze-fasta)","install_command":"npx skills add ClawBio/ClawBio --skill analyze-fasta","risk_summary":"Needs review; Blocked for auto-install; Review before production","verification_result":"Report the smallest successful task, files touched, warnings, and any missing setup."}},"outcome_feedback":{"endpoint":"https://www.openagentskill.com/api/agent/outcome","method":"POST","requires_resolve_event_id":true,"event_id_source":"Use install_receipt.outcome_feedback.event_id or feedback.event_id returned by /api/agent/resolve for the current task.","expected_outcomes":["success","failed","not_relevant","blocked_by_risk","setup_required"],"payload_template":{"event_id":"<install_receipt.outcome_feedback.event_id or feedback.event_id from /api/agent/resolve>","skill_slug":"clawbio-analyze-fasta","task":"Evaluate analyze-fasta before installing it in an AI agent workflow","agent":"codex","outcome":"success","install_used":true,"risk_blocked":false,"setup_required":false,"task_success":true,"output_quality":4,"error_type":null,"human_review_required":false,"workspace":"sandbox","time_to_useful_ms":120000,"notes":"Report the smallest successful task, setup friction, files touched, and risk notes."}},"endpoints":{"web":"https://www.openagentskill.com/skills/clawbio-analyze-fasta","api":"https://www.openagentskill.com/api/agent/skills/clawbio-analyze-fasta","audit":"https://www.openagentskill.com/skills/clawbio-analyze-fasta/audit","eval":"https://www.openagentskill.com/api/agent/evals?slug=clawbio-analyze-fasta&task=Evaluate%20analyze-fasta%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&max_risk=medium","resolve":"https://www.openagentskill.com/api/agent/resolve?task=Evaluate%20analyze-fasta%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&agent=codex&max_risk=medium","receipt":"https://www.openagentskill.com/api/agent/receipt?task=Evaluate%20analyze-fasta%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&agent=codex&max_risk=medium&format=text","install":"https://www.openagentskill.com/api/skills/clawbio-analyze-fasta/install","manifest":"https://www.openagentskill.com/api/registry/manifest/clawbio-analyze-fasta"}},"endpoints":{"web":"https://www.openagentskill.com/skills/clawbio-analyze-fasta","api":"https://www.openagentskill.com/api/agent/skills/clawbio-analyze-fasta","eval":"https://www.openagentskill.com/api/agent/evals?slug=clawbio-analyze-fasta","audit":"https://www.openagentskill.com/skills/clawbio-analyze-fasta/audit","resolve":"https://www.openagentskill.com/api/agent/resolve?task=Evaluate%20analyze-fasta%20before%20installing%20it%20in%20an%20AI%20agent%20workflow&agent=codex&max_risk=medium"}},"meta":{"endpoint":"/api/agent/evals","mode":"skill_eval","purpose":"Pre-install eval contract for a single skill. Agents should read this before installing a reusable skill.","generated_at":"2026-08-23T22:01:06.417Z"}}